FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6515096
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG194780.2989671986414322No Hit
GGGGTG114800.17620615260312358No Hit
TGGGGG114640.175960569115175No Hit
GTGGGG108220.1661065316612372No Hit
GGGTGG106890.16406511891766445No Hit
GGGGGT103510.15887716773475016No Hit
GGGCGG91770.14085747930652134No Hit
GGTGGG91600.14059654685057596No Hit
GGGGCG84920.13034343622872172No Hit
AGGGGG83140.1276113199252935No Hit
GGGGAG82400.12647549629353122No Hit
GGGGGC81430.12498664639784281No Hit
GCGGGG80900.12417315109401306No Hit
GAGGGG80000.12279174397430215No Hit
CGGGGG79900.12263825429433427No Hit
GGGGGA79540.12208569144644991No Hit
GGGTTG79520.12205499351045633No Hit
TGTGGG74120.11376655079219093No Hit
GTTGGG73520.11284561271238368No Hit
TGGTGG73360.11260002922443507No Hit
TTGGGG72670.11154095043265672No Hit
TGGGTG71150.10920790729714498No Hit
GGGAGG70900.10882418309722527No Hit
GGCGGG69630.10687486416163323No Hit
GGTTGG69360.10646044202571996No Hit
GTGGTG68980.10587718124184203No Hit
GGAGGG68800.10560089981789984No Hit
GGGGTT67940.10428088857017609No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)