FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10714042
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG233470.21791029006606472No Hit
GGGGGT170980.15958496335929986No Hit
GGGGTG169760.15844627079117293No Hit
GGTGGG160380.14969140498049197No Hit
TGGGGG156890.14643399755199765No Hit
GGGTGG148150.1382764786623013No Hit
GTGGGG147820.1379684716561686No Hit
GTTGGG127230.11875070118261624No Hit
GGTTGG125340.1169866610565835No Hit
GGGGTT122140.11399992645166035No Hit
AGGGGG121890.11376658781065074No Hit
GGTGGT121110.11303857125070071No Hit
TGTGGG120660.11261856169688339No Hit
TTGGGG119640.11166654004156414No Hit
GGGTTG119040.11110652730314105No Hit
GGCGGG118670.11076118611444681No Hit
GGGCGG118210.11033184301498912No Hit
TGGTGG118070.11020117337602373No Hit
GGGGGA116800.10901581307969485No Hit
TGGGTG116340.10858646998023715No Hit
GTGGGT115880.10815712688077946No Hit
GTGGTG115340.10765311541619867No Hit
GGTGTG112490.10499305490868899No Hit
GGGTGT110760.10337835151290242No Hit
GCGGGG109440.10214632348837162No Hit
TTTTGG108080.10087696128127928No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)