FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4450814
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG117810.2646931550049047No Hit
TGGGGG68220.15327533345585775No Hit
GGGTGG64130.14408600314459333No Hit
AGGGGG59560.133818218420271No Hit
GGGGTG59180.13296444200993346No Hit
GGGGGT57740.12972907877075968No Hit
GGGCGG56190.12624656972859347No Hit
GGTGGG55910.12561747132097634No Hit
GTGGGG54990.12355043369594865No Hit
GGGGCG54090.12152833167146504No Hit
GAGGGG53140.11939389064562123No Hit
CGGGGG52570.11811322603011494No Hit
GCGGGG49930.11218172675829634No Hit
GGGGAG48960.11000235013190847No Hit
GGGGGC48750.1095305263261956No Hit
GGGGGA48590.10917104152184298No Hit
GGCGGG48470.10890142791857849No Hit
TGTGGG46930.10544138667668432No Hit
GGGGTA46520.10452020686553065No Hit
GGCCGG45980.1033069456508405No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)