FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7305228
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG410390.561775758402065No Hit
GGGGGT203960.2791973091052052No Hit
GTGGGG188480.2580070053939453No Hit
TGGGGG184910.2531200942667361No Hit
GGGTGG184170.25210712109190847No Hit
GGGGTG180060.2464810133236088No Hit
GGTGGG170810.23381884863826288No Hit
AGGGGG163550.22388076046360225No Hit
GGGCGG161070.22048593144526085No Hit
CGGGGG160760.22006157781796817No Hit
GCGGGG159140.2178439878946968No Hit
GGGGCG157800.2160096851186575No Hit
GGGGGA152810.20917896060191413No Hit
GAGGGG146920.20111624168335335No Hit
GGGAGG146080.19996638024165708No Hit
GGAGGG142810.19549013391505374No Hit
GGGGAG136240.1864965747817864No Hit
GGGGGC135540.18553835691370618No Hit
GGCGGG131190.1795837173049219No Hit
TTGGGG114960.15736675159214744No Hit
GGGGTT108230.14815417123189037No Hit
GGGTGT98500.13483494286557518No Hit
TGGGGT98380.13467067694533286No Hit
GTTGGG96860.13258997528893005No Hit
GTGTGG96620.13226144344844543No Hit
ATGGGG95790.131125270833436No Hit
TGGTGG95560.13081042781963823No Hit
TGTGGG94250.1290171915236595No Hit
GTGGTG93910.12855177141630625No Hit
GGTGGT93760.12834643901600334No Hit
TCGGGG93510.12800421834883183No Hit
GTGGGT92130.12611516026604508No Hit
GTCGGG91980.12590982786574217No Hit
GGGTTG91760.12560867367863127No Hit
GGGGTA90960.12451356754368242No Hit
GGTTGG87600.11991412177689731No Hit
TGGGTG86530.11844941732140324No Hit
GTAGGG86450.11833990670790838No Hit
GTGAGG85980.11769653185362593No Hit
CGGTGG85330.11680675811897999No Hit
TAGGGG84750.1160128061711421No Hit
TGAGGG84400.11553369723710197No Hit
GGTGTG83920.11487663355613269No Hit
AGGGGT83760.1146576123291429No Hit
TGGGGA83310.11404161512823419No Hit
CGGGGT82810.11335717379389117No Hit
GAGGGT81580.11167344811140734No Hit
AGTGGG80370.11001710008229722No Hit
GCGGGT80180.10975701237524688No Hit
AGGGTG79900.10937372522801479No Hit
TGCGGG79080.10825124143969223No Hit
CTGGGG79010.1081554196528842No Hit
CGGGTG78840.10792270959920758No Hit
GTGGGA78780.10784057663908642No Hit
GGGTAG78580.1075668001053492No Hit
GGTCGG78310.10719720178480396No Hit
CAGGGG78070.10686866994431933No Hit
GGCGGT77650.10629373922347118No Hit
GGGTCG76790.1051165001284012No Hit
AGGTGG76770.10508912247502748No Hit
GGGAGT76410.10459632471430051No Hit
GGGGTC76170.10426779287381585No Hit
GGGGCT75660.10356966271278596No Hit
ACGGGG75390.10320006439224073No Hit
TGGCGG75350.10314530908549328No Hit
GAGTGG75170.10289891020512981No Hit
GGAGGT74820.10241980127108968No Hit
GCTGGG74640.10217340239072621No Hit
GCGTGG74600.10211864708397876No Hit
GGTAGG74420.10187224820361526No Hit
GATGGG74190.10155740518981747No Hit
TGGGGC74100.10143420574963574No Hit
GGTGGA74060.10137945044288829No Hit
AAGGGG73840.10107829625577737No Hit
GGGCGT73560.10069500910854527No Hit
GGGCCG73470.10057180966836353No Hit
GTGCGG73200.1002022113478183No Hit
GTGGCG73140.10012007838769714No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)