FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7912521
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG177830.22474505912843706No Hit
TGGGGG124540.15739610675282883No Hit
GGGGGT114370.14454306029645925No Hit
GGGTGG114270.1444166783254035No Hit
GGTGGG109770.13872948962789483No Hit
GTGGGG101940.12883378129422973No Hit
GGGGTG95390.12055576219007823No Hit
TGGGTG91500.11563950351600963No Hit
GGGGTT90800.11475482971861937No Hit
GGGGAG89490.11309922589778909No Hit
AGGGGG89390.11297284392673335No Hit
GTTGGG89190.11272007998462184No Hit
GGGGGA87660.11078643582746889No Hit
TGTGGG87210.11021771695771802No Hit
GGGGGC86910.10983857104455079No Hit
CGGGGG86690.10956053070822815No Hit
TTGGGG86420.1092192993863776No Hit
GGTGGT85580.10815769082950934No Hit
GGGTGT85420.10795547967582013No Hit
GGTTGG83080.10499814155311563No Hit
GAGGGG82980.10487175958205988No Hit
GGTGTG82360.10408819136151423No Hit
GGAGGG80900.1022430145841003No Hit
GGGCGG80360.10156055194039929No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)