FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7165213
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG231200.32267010066553503No Hit
GGGTGG138500.19329502137619636No Hit
GTGGGG134510.18772645000225394No Hit
GGGGTG133170.1858563032250402No Hit
TGGGGG129520.1807622467050177No Hit
GGGGGT128840.1798132169971779No Hit
GGTGGG125940.17576588441962576No Hit
GGGGGA111030.15495701244331467No Hit
GGGAGG109500.1528216956006751No Hit
AGGGGG109010.1521378359582611No Hit
CGGGGG106340.14841149872306655No Hit
GGGCGG103320.14419669031471918No Hit
GGGGAG101220.14126586327580212No Hit
GGGGGC99960.1395073670524519No Hit
GGGGCG98940.13808382249069218No Hit
GGAGGG97700.13635323890580783No Hit
GAGGGG96920.13526464600563864No Hit
GCGGGG95540.13333867395149313No Hit
GGCGGG90680.12655590280428508No Hit
GTGGTG84380.11776342168753393No Hit
TTGGGG82970.11579558067568961No Hit
GGGTAG82320.11488841992554862No Hit
GGTGTG82240.11477676937168511No Hit
TAGGGG81510.11375795806768062No Hit
GGGGTT81070.11314388002143132No Hit
TGGGTG80760.11271123412521022No Hit
GGGTGT80500.11234836982515384No Hit
GGGTTG78730.10987810132092374No Hit
TGTGGG78130.10904072216694745No Hit
GTGGGT77280.10785443503214767No Hit
GGTGGT77090.10758926496672186No Hit
GTTGGG75720.10567724923180931No Hit
AGGTGG73860.10308137385448277No Hit
AGGGGT73280.10227190733897235No Hit
GGTTGG73280.10227190733897235No Hit
AGTGGG73220.10218816942357471No Hit
GGGGTA73210.10217421310434176No Hit
TGGTGG73210.10217421310434176No Hit
ATGGGG72500.10118331443880314No Hit
GTAGGG72390.10102979492724082No Hit
TGGGGT72360.10098792596954201No Hit
CGGGGT72070.1005831927117868No Hit
GTGTGG71950.10041571688099153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)