FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11730477
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG515500.43945357038763216No Hit
GGGGTG249430.21263414948940268No Hit
GGGGGT240390.20492772800287662No Hit
GGGTGG238360.20319719308942No Hit
GTGGGG234310.19974464806503606No Hit
AGGGGG231420.19728098013405593No Hit
TGGGGG228940.19516682910677888No Hit
GGGCGG221060.18844928471365657No Hit
GGTGGG220760.18819354063777627No Hit
GGGGCG216490.1845534499577468No Hit
GGGAGG205160.1748948486920012No Hit
GGCGGG204290.17415319087194836No Hit
GGGGGA204050.17394859561124412No Hit
GGGGGC202690.17278922246725348No Hit
GAGGGG200240.17070064584756442No Hit
CGGGGG199160.16977996717439536No Hit
GCGGGG188080.16033448597188332No Hit
GGAGGG175920.14996832609620223No Hit
GGGGAG173960.148297464800451No Hit
GCAATT153210.13060849955206427No Hit
GGTTGG148580.12666151598097844No Hit
GGGTGT142500.12147843604313789No Hit
GGGTTG137930.11758260128722814No Hit
TAGGGG137800.11747177885434666No Hit
GTTGGG135290.11533205341948158No Hit
TGGGTG133460.1137720145566118No Hit
CGGGGT132200.11269788943791459No Hit
TGGGGT131330.11195623161786175No Hit
TTGGGG130250.1110355529446927No Hit
GGGGTT129750.11060931281822554No Hit
GTGGGT129670.1105411143979908No Hit
GGTGTG127890.10902369954776776No Hit
GGTGGT127670.1088361538921222No Hit
TGGTGG126750.10805187205942265No Hit
GTGTGG125650.10711414378119491No Hit
AGGTGG123730.10547738169556105No Hit
GTGGTG122990.10484654630838967No Hit
GGGTAG122110.10409636368580749No Hit
ATGGGG121770.10380652039980982No Hit
GGGGTA121690.10373832197957508No Hit
TGTGGG119690.10203336147370648No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)