FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7789331
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG549890.7059527962029088No Hit
GGGGGT275530.35372742537196067No Hit
TGGGGG273260.3508131828009363No Hit
GTGGGG252410.32404580059571225No Hit
GGGGTG251870.3233525446537065No Hit
GGGTGG245440.3150976637146374No Hit
GGTGGG228830.2937736244614589No Hit
CGGGGG211600.2716536246822737No Hit
AGGGGG207460.26633866246022925No Hit
GCGGGG203000.2606128819021813No Hit
GGGGGA196530.2523066486711118No Hit
GAGGGG196520.2522938105981117No Hit
GGGCGG194810.2500985001150933No Hit
GGGGAG194250.2493795680270873No Hit
GGCGGG191980.24646532545606292No Hit
GGGGGC187120.2402260219780107No Hit
GGGGCG177030.22727240632090226No Hit
GGGAGG176550.22665617881689715No Hit
GGAGGG169160.2171688428698177No Hit
GGGGTT147440.18928454831358432No Hit
GGGTGT146460.18802641715957377No Hit
TTGGGG140400.18024654492150866No Hit
GTGTGG136370.17507280150246537No Hit
GGGTTG135270.17366061347245354No Hit
GGTGGT134310.17242815846444323No Hit
TGGTGG132370.16993757230242237No Hit
GGTTGG132300.16984770579142164No Hit
TGTGGG130760.1678706425494051No Hit
GTTGGG129080.16571384628538702No Hit
GTGGGT124540.15988536114333823No Hit
GTGGTG122920.15780559331732083No Hit
TCGGGG122000.15662449060131095No Hit
AGGGGT119690.15365889573828614No Hit
GGTGTG119460.15336362005928364No Hit
CGGTGG116340.14935814128325015No Hit
TGGGTG115050.14770202986623626No Hit
GGGGTA114860.1474581064792342No Hit
TGGGGT112800.1448134634412121No Hit
CGGGGT110340.14165529748318564No Hit
ATGGGG109600.14070528008117772No Hit
GGGGCT107280.1377268471451528No Hit
GGGATG106460.13667412515914396No Hit
GTCGGG106300.13646871599114224No Hit
TAGGGG106000.13608357380113903No Hit
GGGTAG105800.13582681234113686No Hit
GGCGGT105440.135364641713133No Hit
GGTCGG104520.1341835389971231No Hit
GCGGGT104100.1336443399311186No Hit
AGGTGG103960.1334646069091171No Hit
GGGGTC102800.13197539044110465No Hit
TGCGGG101570.13039630746209144No Hit
TGAGGG101160.129869946469087No Hit
GAGGGT100710.12929223318408217No Hit
GCGTGG100700.12927939511108208No Hit
GGGGAT100330.1288043864100781No Hit
AGGGTG99630.12790572130007058No Hit
GGGCGT99620.12789288322707046No Hit
GGTAGG99280.12745638874506682No Hit
TGGGGA97980.12578743925505284No Hit
AGTGGG97890.12567189659805186No Hit
GGGTGA97410.1250556690940467No Hit
CTGGGG97230.12482458378004478No Hit
GGGCTG96920.12442660351704145No Hit
TGGGGC95600.12273197788102727No Hit
GGTGGA95500.12260359715102619No Hit
GGCTGG95110.122102912304022No Hit
GTAGGG94620.12147384672701673No Hit
GTGAGG93460.11998463025900427No Hit
GTGGGA93100.11952245963100042No Hit
TGGCGG92830.1191758316599975No Hit
GGGGCC91780.11782783399498621No Hit
GGGGCA91150.11701903539597944No Hit
CGGGTG90870.11665956935197645No Hit
GTGCGG90450.11612037028597191No Hit
TGGGCG90070.11563252351196784No Hit
GGCCGG89700.11515751481096387No Hit
GTGGGC89400.11477237262096064No Hit
GCTGGG89330.11468250610995989No Hit
GATGGG88860.11407911667895484No Hit
TGGGAG88670.1138351932919528No Hit
GCGGTG88240.11328315615294818No Hit
GGGTCG88060.11305207083894624No Hit
CAGGGG87890.11283382359794442No Hit
GCAGGG87080.1117939396849357No Hit
CGTGGG86900.11156285437093377No Hit
GGGAGT86800.11143447364093272No Hit
GGTGGC85960.11035607550892368No Hit
GGAGGT85600.10989390488091982No Hit
GAGGTG85560.10984255258891938No Hit
GGGTGC85340.10956011498291703No Hit
GACGGG85300.10950876269091658No Hit
GAGTGG85210.10939322003391562No Hit
GGTGAG84860.10894388747891186No Hit
GTGGCG84780.10884118289491099No Hit
GGATGG84130.10800670814990403No Hit
GGGCAG83730.10749318522989972No Hit
GGGTTT83080.10665871048489274No Hit
GCGGGC82800.10629924444088973No Hit
TTGTGG82750.1062350540758892No Hit
GTGGAG82350.10572153115588488No Hit
AGGCGG82210.10554179813388338No Hit
GGCGTG82130.10543909354988253No Hit
GGCAGG81420.1045275903668749No Hit
GGGACG80670.10356473489186682No Hit
GGGCCG80130.10287147894986104No Hit
ACGGGG79680.10229376566485619No Hit
GTGTGT79330.10184443310985243No Hit
GGAGTG78980.10139510055484867No Hit
CCGGGG77930.10004710288983738No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)