FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5066268
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG229620.4532330307042581No Hit
TGGGGG123800.24436133264169996No Hit
GGGGGT121590.2399991473013271No Hit
GTGGGG106910.21102318313993654No Hit
GGTGGG97300.19205458534763656No Hit
AGGGGG93020.18360655219976518No Hit
GGGGCG89280.17622439239298038No Hit
GGGCGG88970.1756125021416159No Hit
GGGGGA87670.17304651076492597No Hit
GGGTGG87200.17211880619027656No Hit
GGGAGG85860.16947386123276542No Hit
GGGGTG85800.1693554308615336No Hit
CGGGGG85620.16900013974783806No Hit
GGAGGG83390.16459847761705462No Hit
GGGGAG81930.1617166719170798No Hit
TTGGGG76640.15127506085347242No Hit
GAGGGG73230.14454426808846274No Hit
TGGGGT70140.1384451039700229No Hit
GCGGGG69510.13720158507208857No Hit
GGGTTG68920.13603701975497545No Hit
TGGTGG68190.13459611690498804No Hit
GGTGGT68000.1342210873960872No Hit
GGGGTT66930.13210907910911937No Hit
GTTGGG66820.131891956761861No Hit
ATGGGG66010.13029314675023113No Hit
GGTTGG65360.1290101510618862No Hit
TGGGTG62710.12377947633247985No Hit
GTGGGT61730.12184511360235978No Hit
GGGTGT61730.12184511360235978No Hit
GGGGGC61450.12129243853661116No Hit
GGCGGG61300.12099636260853157No Hit
TGTGGG59740.11791717295650368No Hit
CGGGGT59670.11777900419006654No Hit
GTAGGG58080.11464059935242274No Hit
GTGGTG58050.1145813841668068No Hit
CTGGGG54920.10840326646754575No Hit
TGGGGA53970.10652811892304158No Hit
TAGGGG53190.10498852409702762No Hit
AGGGGT52290.10321206852855001No Hit
TCGGGG52060.10275808543882795No Hit
GGGGAT52000.10263965506759612No Hit
GGTAGG51870.10238305592992712No Hit
GGGGCT51570.10179090407376791No Hit
CAGGGG51420.1014948281456883No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)