FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7035598
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG368830.5242340452083817No Hit
GTGGGG183010.2601200352834258No Hit
TGGGGG181550.2580448740817767No Hit
GGGGGT178610.2538661248127025No Hit
GGGGTG173790.24701525016068288No Hit
AGGGGG169680.24117352924371177No Hit
GGTGGG168790.2399085337166791No Hit
GGGTGG168170.23902730087762264No Hit
CGGGGG153990.21887265304242792No Hit
GCGGGG150190.2134715485449851No Hit
GGAGGG149540.21254767540726463No Hit
GGGGAG147650.2098613365914312No Hit
GAGGGG147380.20947757390345498No Hit
GGGGGA146420.20811308434620623No Hit
GGGAGG138910.19743879624731261No Hit
GGGCGG127820.18167609917451225No Hit
GGGGCG126840.18028318275148753No Hit
GGGGGC119640.17004951107212207No Hit
GGCGGG115740.16450627224579914No Hit
GGGTTG107690.1530644587709531No Hit
TGGGTG105230.14956795428050323No Hit
GGGGTT102950.1463272915820375No Hit
GTGGTG98200.13957591096023395No Hit
GTGGGT98170.1395332706615699No Hit
ATGGGG97240.13821142140298523No Hit
TTGGGG96550.1372306945337127No Hit
GGTTGG96320.13690378557728852No Hit
GGGTGT96020.13647738259064832No Hit
GGTGGT95240.13536873482538372No Hit
GGGTAG93340.13266818257666227No Hit
TGGGGT91710.13035139301591706No Hit
GTGTGG91500.1300529109252689No Hit
TAGGGG90630.12881634226401226No Hit
GTTGGG90100.12806303032094785No Hit
TGGTGG88450.1257178138944266No Hit
AGGGGT85680.12178069298444852No Hit
CGGGGT85370.12134007656492028No Hit
GGGATG84800.12052991089030385No Hit
GTAGGG84760.12047305715875183No Hit
AGGGTG84750.12045884372586381No Hit
GGTAGG84520.12013193476943965No Hit
TGTGGG82650.11747402281938224No Hit
GGGGTA82490.11724660789317412No Hit
AGGTGG82360.11706183326563001No Hit
GGTGTG80700.11470240340622076No Hit
TGAGGG80080.1138211705671643No Hit
GGATGG79730.11332370041608403No Hit
AGTGGG78550.11164651533529914No Hit
GGAGGT77810.1105947213015866No Hit
CTGGGG76750.1090880974154578No Hit
GAGGTG76550.10880382875769765No Hit
GAGTGG76520.10876118845903361No Hit
GGTGGA76450.10866169442881757No Hit
GTGAGG73050.103829127246895No Hit
CAGGGG72580.10316109590115866No Hit
AAGGGG72410.10291946754206252No Hit
GGTTTG72160.10256413171986234No Hit
GGGTCG71920.10222300933055016No Hit
GGGGAT71910.10220879589766214No Hit
GGGTGA71820.10208087500167008No Hit
GGTGAG71570.10172553917946987No Hit
CGGGTG71380.10145548395459775No Hit
ACGGGG71060.10100065410218152No Hit
GATGGG71020.10094380037062947No Hit
GCGGTG70410.10007678096446102No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)