FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8133904
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG373110.45870961840710195No Hit
GGGTGG202490.24894564774799408No Hit
GGGGTG201430.24764246049621438No Hit
TGGGGG193320.23767184859816393No Hit
GGGGGT189200.23260663022332206No Hit
GTGGGG186070.22875853956476497No Hit
GGTGGG181570.2232261408543794No Hit
GCGGGG166180.20430533726486078No Hit
GGGGCG164850.2026702060904579No Hit
GGGGGC157720.19390442768933588No Hit
GGGCGG154390.18981045264365057No Hit
AGGGGG149990.18440099612682914No Hit
GGGGGA149540.18384775625579056No Hit
CGGGGG146910.18061437656505414No Hit
GGAGGG145670.17908989336485898No Hit
GAGGGG144450.17758999860337668No Hit
GGGGAG139490.17149206580259613No Hit
GGCGGG139290.1712461814154679No Hit
GGGAGG133200.16375900182741276No Hit
GGTTGG126040.1549563407682215No Hit
GGTGTG113720.1398098625211215No Hit
GTGTGG111650.1372649591143441No Hit
GTGGTG110880.13631830422390034No Hit
GGTGGT109870.1350765880689027No Hit
TGTGGG108770.13372422393969735No Hit
GGTAGG105840.13012201766826853No Hit
TTGGGG105770.13003595813277363No Hit
GGGTTG104040.12790905818411427No Hit
TGGGTG102740.1263108096677807No Hit
GTTGGG100250.12324954904803401No Hit
GGGGCT98730.12138082770585934No Hit
AGTGGG97660.1200653462347232No Hit
GGGTAG97390.11973340231210007No Hit
GTGGGT96860.11908180868621021No Hit
GGGTGT95930.11793844628606386No Hit
GGGGTT93530.1149878336405249No Hit
TGGTGG92570.11380758858230931No Hit
TGGGGT91030.1119142788014218No Hit
GAGGTG90620.11141021580780888No Hit
GTGAGG90500.11126268517553195No Hit
GGGTCG88710.10906201991073414No Hit
GCTGGG88020.10821371877514167No Hit
GTGGCG87710.1078325979750929No Hit
GGGGTA86870.10679988354915426No Hit
TGGGGC86750.1066523529168773No Hit
TAGGGG86400.10622205523940287No Hit
CGTGGG86170.10593928819420538No Hit
GTGGAG85680.10533687144574119No Hit
AGGTGG85460.10506639861990012No Hit
GTAGGG85130.1046606893811385No Hit
GGTGGA84070.10335750212935879No Hit
GCGGTG83620.10280426225832023No Hit
GGGTGC82700.10167319407753031No Hit
GGGCCG82660.10162401720010465No Hit
GGTGAG82290.1011691310839174No Hit
GGTGCG82060.10088636403871991No Hit
CCGGGG81980.10078801028386859No Hit
GATGGG81760.10051753745802752No Hit
CTGGGG81700.10044377214188906No Hit
GGGTGA81680.10041918370317625No Hit
GAAGGG81460.10014871087733515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)