FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2172498
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT229811.05781455264861No Hit
GGGGGG107690.4956966588691911No Hit
GGGGGC58830.27079426540323626No Hit
GGGTGG57990.2669277486101253No Hit
AGGGGG55200.25408538926157814No Hit
TGGGGG54170.24934430319383494No Hit
GGGCGG46040.21192194423193944No Hit
GGGGCG45070.20745703793513273No Hit
GAGGGG44970.20699673831690524No Hit
GGGAGG43300.19930973469250604No Hit
GTGGGG42930.19760662610506433No Hit
GGGGTG41830.19254333030456183No Hit
GGTGGG39960.18393572744370765No Hit
AGGGTG39910.18370557763459391No Hit
GGCGGG39160.1802533304978877No Hit
GGGGGA38870.17891846160502795No Hit
GCGGGG38380.1766629934757132No Hit
GGGGAG36830.169528349393187No Hit
CGGGGG35330.16262385511977456No Hit
GGAGGG35190.16197943565425607No Hit
GGGGGT34350.1581129188611451No Hit
GCAGGG31770.14623718871087568No Hit
GGGTGT30640.14103580302490498No Hit
GGGCGC30540.14057550340667746No Hit
GGGCCG30510.14043741352120923No Hit
GGTGGC28150.1295743425310403No Hit
AGGCGG27880.12833153356182606No Hit
GGTGGT27780.12787123394359856No Hit
TGGTGG27730.1276410841344848No Hit
TGGGTG27140.1249253163869426No Hit
TGGGCG27120.12483325646329708No Hit
CGGGTG26990.12423486695960136No Hit
GATGGG26520.12207145875393212No Hit
GAGTGG26480.12188733890664111No Hit
CAGGGT26110.12018423031919936No Hit
GGGTAG25510.11742243260983438No Hit
GTGGTG25400.11691610302978414No Hit
GGTGCG25380.11682404310613866No Hit
GTGTGG25340.11663992325884764No Hit
GGGGTA24920.11470666486229217No Hit
AGCAGG24880.11452254501500116No Hit
GAGGTG24810.11420033528224192No Hit
AGGGGT24490.11272737650391393No Hit
TGCGGG24480.11268134654209118No Hit
GGGGTT24370.11217501696204092No Hit
GGTTGT24330.11199089711474994No Hit
ATGTGG24100.1109322079928267No Hit
GGGTTT24010.11051793833642194No Hit
GGTAGA23990.11042587841277643No Hit
ACGGGG23980.1103798484509537No Hit
AGGGGA23840.10973542898543519No Hit
ATGAGG23730.10922909940538496No Hit
GGCGGC23490.10812438032163896No Hit
GGGATG23350.10747996085612047No Hit
GGTGAG23330.10738790093247498No Hit
TTGGGG23230.10692760131424746No Hit
GTGTTG22760.10476419310857825No Hit
GCGGGC22660.10430389349035073No Hit
TTGCGG22530.103705503986655No Hit
GGATGG22490.103521384139364No Hit
TGGAGG22350.1028769646738455No Hit
GGGGAC22110.10177224559009951No Hit
CAGGGG22110.10177224559009951No Hit
GGGTGA22000.10126591601004928No Hit
GATGGT21960.10108179616275827No Hit
TGTGGG21800.10034531677359426No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)