FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5902796
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG370210.6271773579842501No Hit
TGGGGG193900.32848839770169935No Hit
CGGGGG181710.30783716733561517No Hit
GGGGGT172790.2927256845738867No Hit
GTGGGG157870.2674495273087533No Hit
GGGTGG153990.2608763711298849No Hit
AGGGGG147430.24976299367282895No Hit
GGGGCG146410.24803499900725012No Hit
GGGGTG146320.24788252888969906No Hit
GGGCGG143650.2433592487356839No Hit
GGGAGG141220.23924255556180496No Hit
GGGGGC138030.23383833695082806No Hit
GGTGGG137930.23366892570910464No Hit
GCGGGG127120.21535557047880363No Hit
GGGGGA123200.2087146498032458No Hit
GAGGGG115080.1949584569753046No Hit
GGAGGG113590.19243422947362573No Hit
GGGGAG112270.19019800108287666No Hit
GGCGGG105310.17840697865892707No Hit
TAGGGG91060.1542658767133406No Hit
CTGGGG89770.15208047169510855No Hit
CAGGGG89580.15175859033583408No Hit
GTGGGT87480.1482009542596424No Hit
TGGTGG87470.14818401313547006No Hit
TCGGGG86690.1468626054500274No Hit
TTGGGG85260.1444400246933826No Hit
GTGGTG83650.14171250370163563No Hit
TGGGTG83590.14161085695660158No Hit
GGGTAG83340.14118732885229304No Hit
CGGTGG80170.13581699248966084No Hit
TGGGGT80040.1355967578754204No Hit
GGGTTG79540.13474970166680333No Hit
ATGGGG78890.13364852859560114No Hit
GGGCCG78550.13307253037374153No Hit
CCGGGG76990.13042971500285627No Hit
GTGGCG74920.1269229022991816No Hit
CGGGGT73640.12475443840512192No Hit
TGGGGC72540.12289091474616436No Hit
TGGAGG71570.12124762570144725No Hit
AAGGGG71310.12080715647296636No Hit
AGGGGT71180.12058692185872592No Hit
TGTGGG70900.12011257038190036No Hit
GGGGTA70150.11884198606897478No Hit
CGGGTG69860.11835069346797687No Hit
GGGCTG69790.11823210559877048No Hit
TGGGCG69380.11753751950770448No Hit
GGGTGC69380.11753751950770448No Hit
GGTTGG69310.11741893163849809No Hit
AGGTGG68640.11628387631895122No Hit
GGGGTT68200.1155384668553682No Hit
GGGTGT68070.11531823224112776No Hit
GTTGGG67830.11491164526099157No Hit
AGCGGG67730.11474223401926814No Hit
AGGGTG67650.11460670502588942No Hit
GCTGGG67410.11420011804575322No Hit
TGAGGG66830.11321753284375742No Hit
GGTGGT66820.11320059171958509No Hit
GTAGGG66170.1120994186483829No Hit
TGGCGG65860.11157424379904031No Hit
AGGGCG65540.11103212782552539No Hit
GGGGCC65380.11076106983876792No Hit
CGGGCG65370.11074412871459559No Hit
ACGGGG65330.11067636421790623No Hit
GCCGGG65040.11018507161690831No Hit
GGTCGG64800.10977848463677214No Hit
GGGCGT64420.10913472191822315No Hit
GGGGCA63060.10683072903078474No Hit
AGGGGC62820.10642414205064854No Hit
CGGGGA62770.10633943642978684No Hit
GGGCGC62600.10605143731885704No Hit
TGGGGA62470.10583120270461659No Hit
GGCCGG62390.10569567371123786No Hit
GTGAGG62390.10569567371123786No Hit
CGGGGC62060.10513661661355059No Hit
GGGCAG61560.10428956040493353No Hit
GTGCGG61480.10415403141155478No Hit
GGAGGT61470.10413709028738245No Hit
GTGGAG61370.10396767904565904No Hit
GGGTCG61310.10386603230062498No Hit
TGCGGG61220.10371356218307393No Hit
GGGCGA61210.10369662105890157No Hit
GGATGG60220.10201944976583979No Hit
GGCTGG60210.10200250864166743No Hit
GGACGG59990.10162980390987593No Hit
CGGAGG59710.10115545243305037No Hit
AGGCGG59410.10064721870788013No Hit
GGTGAG59340.10052863083867374No Hit
GGGGTC59340.10052863083867374No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)