FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6959406
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG327050.4699395321957075No Hit
GGGGGT161690.23233304681462758No Hit
CGGGGG157970.22698776303609822No Hit
GAGGGG149080.21421368432880625No Hit
GGTGGG147170.21146919722746454No Hit
GGCGGG146550.21057831659770962No Hit
GCGGGG145900.20964432884070855No Hit
GGGCGG144500.2076326629025523No Hit
TGGGGG143510.20621012770342756No Hit
GTGGGG142870.20529050898884185No Hit
GGGTGG140260.20154018891842207No Hit
AGGGGG138450.1989393922412344No Hit
GGGGTG133590.19195603762734922No Hit
GGGGCG131970.1896282527560542No Hit
GGGGGA131320.18869426499905306No Hit
GGGGGC131320.18869426499905306No Hit
GGAGGG125370.18014468476188916No Hit
GGGAGG121790.17500056757717541No Hit
GGGGAG121350.17436832971089775No Hit
TCGGGG91760.13185033320372458No Hit
GGTGGT88670.1274102990973655No Hit
TGTGGG87250.12536989507437848No Hit
TTGGGG86950.12493882380191643No Hit
GGTTGG83780.12038383735623415No Hit
CAGGGG82660.11877450460570915No Hit
CCGGGG82350.11832906429083172No Hit
TGGGGT82260.11819974290909312No Hit
GGGGTT81820.11756750504281545No Hit
TGCGGG81320.11684905292204537No Hit
GGCCGG80730.11600127941953665No Hit
GCCGGG78680.11305562572437935No Hit
GGGCCG77750.11171930477974701No Hit
GGCAGG76830.11039735287753008No Hit
GTAGGG76400.1097794840536678No Hit
GCGGGT76330.10967890075675998No Hit
TAGGGG76080.10931967469637496No Hit
GTTGGG75070.10786840141241939No Hit
ATGGGG73880.10615848536498661No Hit
GGGTTG73590.10574178313493997No Hit
GACGGG72760.10454915261446163No Hit
GTGGTG72500.1041755575116612No Hit
TGGTGG72360.10397439091784558No Hit
GGGGCC72210.10375885528161456No Hit
GGGCTG71760.10311224837292149No Hit
GGGGTC71030.10206330827659718No Hit
GTGGGT70980.10199146306452017No Hit
CGGTGG70680.10156039179205813No Hit
GGGTGT70590.10143107041031951No Hit
GGTCGG70270.10097126105302666No Hit
CGGGGT69750.10022407084742577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)