FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21911155
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG683260.31183203258796716No Hit
TGGGGG472160.2154884121809188No Hit
GGGGTG461000.21039511609497538No Hit
GTGGGG422590.19286523234398187No Hit
GGGTGG417270.19043724532093356No Hit
GGTGGG385040.17572784273581196No Hit
GGGCGG384080.17528970973917166No Hit
GGCGGG374090.17073038824288359No Hit
GGGGGT368810.16832065676136196No Hit
AGGGGG365540.16682826624155594No Hit
GGGGGC359220.16394389068034065No Hit
GCGGGG357890.1633368939245786No Hit
GGGGCG335480.15310922678425667No Hit
GGGAGG332760.15186784996044253No Hit
GAGGGG328780.15005142357853796No Hit
GGGGGA328710.1500194763808663No Hit
CGGGGG299550.13671118660791728No Hit
GGGGAG291230.13291403397036808No Hit
GGAGGG286690.13084203000709No Hit
GGGCTG279640.12762449081301283No Hit
GTTGGG274310.12519193990458286No Hit
TTGGGG272380.1243111100259206No Hit
TGTGGG264170.12056416012756974No Hit
GTGTGG261740.11945513597982396No Hit
TAGGGG259930.11862907272574175No Hit
GGTCGG257530.117533740234141No Hit
TGAGGG257030.11730554596505753No Hit
GGTGGT256130.11689479628070724No Hit
TGGTGG250550.11434814823773554No Hit
TGGGCG248190.11327107128766147No Hit
TGCGGG247790.11308851587239468No Hit
AGGGGT246630.11255910516812098No Hit
GGGTGT243390.11108040630445999No Hit
GGTTGG242630.1107335510154531No Hit
TGGGGT237310.10830556399240479No Hit
GGGTTG235510.10748406462370423No Hit
CGGGGT233010.10634309327828678No Hit
GTGGGT231840.10580911868863144No Hit
GTAGGG230550.10522037747439604No Hit
GGCTGG224130.10229036305936406No Hit
GGTGTG223350.10193437999959382No Hit
GGGGCT223010.10177920789661704No Hit
GGGGTT221190.10094858075715314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)