FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2828975
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG111890.3955142763721843No Hit
GGTGGG96980.34280967488224534No Hit
GGCGGG68020.24044044220963423No Hit
TGGTGG63830.225629424084695No Hit
GGGGGA60070.21233839111338915No Hit
GGAGGG55190.19508832704424747No Hit
TGGGTG54310.19197765975309078No Hit
GCGATG52580.1858623706466123No Hit
GCTGGT50820.1796410360642989No Hit
GGGGGC49790.17600014139396777No Hit
GGTGAT49710.17571735345840808No Hit
GGGTCG48210.17041507966666372No Hit
GGGAGG46900.16578442722187364No Hit
GGGCGT44710.15804310748592687No Hit
GGAGTG43540.15390733392836628No Hit
ATCGGG42160.14902924203996146No Hit
TGGGTT42100.1488171510882917No Hit
GGGGGT41620.1471204234749335No Hit
CGGGGT41620.1471204234749335No Hit
ATCATT41390.14630740816019935No Hit
GTGGGT40720.14393905919988687No Hit
TGGGGG40070.14164140722346433No Hit
GGGGTC39740.14047490698928058No Hit
GCCGGG39640.14012142206983094No Hit
TGGCGG39580.13990933111816117No Hit
TTTGGG39220.13863678540814253No Hit
CAGGGG39150.1383893459645278No Hit
GTGCTG38940.13764702763368358No Hit
AGGTGT38620.1365158758914448No Hit
GGAGGC38590.1364098304156099No Hit
GGGGTG38460.13595030002032538No Hit
GTACAG38270.1352786786733711No Hit
TGGTAT37870.1338647389955726No Hit
CCGGGG36870.13032988980107638No Hit
ATGTAG36860.1302945413091314No Hit
GGGGAT36730.1298350109138469No Hit
GGGGTT36590.1293401320266174No Hit
GTGGGG36540.1291633895668926No Hit
CGGAAG36460.12888060163133291No Hit
GGGGCC36360.12852711671188327No Hit
TAGGAG35990.12721922250991968No Hit
GGTGGT35720.12626481322740568No Hit
CGTGAG35590.12580528283212117No Hit
TGGGGT35490.12545179791267155No Hit
CGGGTC35390.12509831299322194No Hit
GGGGAG35020.12379041879125832No Hit
ATCATG34940.12350763085569863No Hit
GGGCTG34890.12333088839597381No Hit
TTGGGC34690.12262391855707457No Hit
TTTTGG34610.12234113062151485No Hit
GGCGCG34160.12075044848399155No Hit
GGGCGC33690.1190890693625783No Hit
GGGATG33290.11767512968477983No Hit
TCGGGT32550.1150593412808526No Hit
GTGAGG31860.1126202953366502No Hit
AAAGGG31550.11152449208635636No Hit
ATGGCG31550.11152449208635636No Hit
GAGGGG31500.11134774962663155No Hit
TGGCTT31490.1113124011346866No Hit
GTTATT31410.11102961319912691No Hit
GGATGC31140.11007520391661291No Hit
GTCTAG31120.11000450693272297No Hit
CGGCCG30950.10940358256965861No Hit
TCGAGT30810.10890870368242915No Hit
GCGGGG30770.1087673097146493No Hit
GTGTAG30620.10823708233547485No Hit
GGGCGG30440.10760080948046555No Hit
GCCGCA30430.10756546098852059No Hit
CCGTCT30410.10749476400463065No Hit
TGCGGG30120.10646965773822674No Hit
CCTGGG30090.10636361226239185No Hit
GTAGGG29850.10551524845571277No Hit
TAGGGG29820.10540920297987787No Hit
GTGGCA29750.10516176353626314No Hit
GTAGCA29720.10505571806042825No Hit
AATGAT29660.10484362710875847No Hit
TGGGGC29540.10441944520541893No Hit
GGGTGG29470.1041720057618042No Hit
GGTATG29330.10367712687457471No Hit
TGGGAC29080.10279341457595066No Hit
GTTTGG29050.10268736910011578No Hit
AGCGGG29020.10258132362428088No Hit
TGGACG28870.10205109624510644No Hit
GGCTGT28860.10201574775316148No Hit
CGTGGG28810.10183900529343666No Hit
TGAAAG28670.1013441264062072No Hit
ATATGG28490.10070785355119788No Hit
CGTCGG28350.10021297466396839No Hit
CGGTAG28340.10017762617202343No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)