FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10801691
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG628310.5816774429114849No Hit
GGGGGT383730.35524993262628973No Hit
TGGGGG353380.3271524801070499No Hit
GAGGGG325840.3016564721208929No Hit
GGGAGG282060.26112578113926793No Hit
GGTGGG275630.2551730094852741No Hit
AGGGGG274920.2545157049947087No Hit
GGGGTG272350.25213644789505646No Hit
GTGGGG253960.2351113358084396No Hit
GGGTGG234620.21720673179782685No Hit
CGGGGG219340.20306079853608106No Hit
GGGGAG218740.20250532995250464No Hit
GGGGGA218730.2024960721427784No Hit
TGGGGT209270.19373818414172372No Hit
TGGAGG196720.1821196329352506No Hit
GGAGGG195630.1811105316750868No Hit
ATGGGG194880.18041619594561628No Hit
GCGGGG193470.17911084477421174No Hit
GGCGGG192500.17821283723076323No Hit
TTGGGG180000.16664057507292146No Hit
GAAGGG179290.16598327058235604No Hit
GGGGCG174300.1613636235289456No Hit
GGTAGG170470.1578178824037829No Hit
GGGTAG168230.15574413302509765No Hit
GGGGTT166090.15376296174367513No Hit
GGGCGG165230.15296679010721564No Hit
GGGTTG159560.1477176119924186No Hit
GAGGGT154110.1426721056915996No Hit
GGGGTA153130.1417648403384248No Hit
GGTTGG152150.14085757498525No Hit
GAGGTG150970.13976515343754975No Hit
GGGAAG148990.1379321071117476No Hit
GGGTGT148140.13714519328501434No Hit
TGGGGA147570.13661749813061677No Hit
TGGTGG144590.13385867083218728No Hit
GGGAGT143040.13242371032461492No Hit
TAGGGG142250.13169234335623933No Hit
TTTGGG141390.1308961717197798No Hit
AGGGGT139200.12886871138972592No Hit
GTAGGG137230.12704492287365005No Hit
CGGGGT136740.12659129019706267No Hit
AGTGGG136550.12641539181226347No Hit
TGGGAG135960.12586918103841335No Hit
GGTGGT135440.1253877749326471No Hit
GGAGTT133670.12374914261109674No Hit
GGGATG133330.12343437708040343No Hit
GATGGG132830.12297148659408975No Hit
GGGGAA132460.12262894763421764No Hit
GGCTGG130340.12066629197224768No Hit
AGGTTG128470.11893508155343456No Hit
GTTGGG128370.11884250345617182No Hit
GGGGGC127630.11815742553642758No Hit
GTGGAG126630.11723164456380025No Hit
TCGGGG125080.11579668405622787No Hit
GGATGG123960.11475980936688525No Hit
GTGGTG123010.11388031744288926No Hit
TGAGGG122720.11361184096082733No Hit
GGTTTG122340.11326004419122894No Hit
TGGAGT120990.11201023987818202No Hit
GGAGAG119680.11079746680404022No Hit
GGAAGG119440.11057527937060965No Hit
AGCGGG117190.10849227218219815No Hit
TTGGAG116840.10816824884177856No Hit
CAGGGG116520.10787199893053782No Hit
AGGTGG116520.10787199893053782No Hit
TGTGGG115820.10722395224969869No Hit
GTGGGT115700.1071128585329834No Hit
GGGCGT115680.10709434291353084No Hit
GTGTGG114890.10636297594515526No Hit
AGGAGG114090.10562235116705339No Hit
CGGGTG113650.10521500753909736No Hit
CGGAGG112720.10435403123455393No Hit
GTCGGG111760.10346528150083167No Hit
GGAGGT111560.10328012530630622No Hit
AGAGGG111430.10315977377986466No Hit
GACGGG111110.10286352386862391No Hit
TGGTGT110520.10231731309477378No Hit
GGGGAT108620.10055832924678182No Hit
GGACGG108400.10035465743280382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)