FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28554706
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG868200.3040479562283009No Hit
GGTGGG519870.18206105851693938No Hit
GGGGTG512240.17938899458464044No Hit
GTTGGG505380.1769865884803717No Hit
GGGTGG501500.1756277931910768No Hit
GGGGGT460000.16109428687516517No Hit
GGGCGG436490.15286096799595836No Hit
GGCGGG434840.15228312979303657No Hit
GGGTTG425510.14901571740924244No Hit
GGTTGG424990.14883361082407923No Hit
TGTGGG410860.1438852145772399No Hit
TGGGGG398690.1396232200744774No Hit
GGGGCG373000.1306264543574709No Hit
CGGGGG364040.12748861781311985No Hit
GGGGGC358460.1255344740723298No Hit
GCGGGG357720.12527532239344366No Hit
AGGGGG355500.12449786735678527No Hit
GGTGTG354720.12422470747904041No Hit
TGCGGG353420.12376944101613234No Hit
GAGGGG349330.12233710268282924No Hit
GGGGTT345420.12096780124439034No Hit
GTGTGG340470.11923428663562496No Hit
AGGGTG337940.11834826805781155No Hit
GTGGGG335030.11732917159084041No Hit
GGAGGG334350.11709103221024234No Hit
GGTCGG329480.11538553399919439No Hit
TGGTGG319880.11202356627310397No Hit
GGGGGA319040.11172939409707107No Hit
GCGTGG307590.10771954717376532No Hit
GGTGGT306000.10716272126913161No Hit
GGTGCG293680.10284819602064893No Hit
GGGCTG292990.10260655459033619No Hit
GGTTTG292000.1022598516685831No Hit
GTTGTG289670.10144387408506325No Hit
GGGATG286810.1004422878666655No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)