FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17221547
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG426200.24748067058087175No Hit
GGGGGT334540.1942566483719494No Hit
GGTGTG297730.17288226197100645No Hit
TGGGGG277300.16101921621791584No Hit
GGTGGT258300.14998652560074888No Hit
GGGGTG253310.1470889926439245No Hit
GGTGGG245200.14237977575417585No Hit
GGGTGG236620.13739764493863413No Hit
GGGTGT230320.13373943699715246No Hit
CGGGGG227040.1318348461958731No Hit
GGGAGG224100.13012768248984835No Hit
GGGGTT214120.12433261657619958No Hit
GGGTTG214060.12429777650056642No Hit
GAGGGG208540.12109248954231579No Hit
GGCGGG205940.11958275293154558No Hit
TTGGGG205100.11909499187268136No Hit
TGGTGG204910.1189846649665097No Hit
TGTTGG204080.11850271058691766No Hit
GGGGCG195350.11343347958229304No Hit
ATGTTG194550.1129689452405176No Hit
GGGCGG194140.11273087139035767No Hit
GGAGGG193340.11226633704858223No Hit
GCGGGG192580.11182502942389554No Hit
GTGGGG189170.10984495179207768No Hit
GGGGTA187550.1089042697499824No Hit
TGGTTG186840.10849199552165668No Hit
GGGGAG186620.10836424857766844No Hit
TGGGGT186570.10833521518130745No Hit
GTGCGG185560.10774874057481595No Hit
GGATGG182320.10586737649062537No Hit
GTGAGG176940.10274338304218547No Hit
GGTTGG175150.1017039874524629No Hit
CGGGTT174810.10150656035720833No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)