FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10650166
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCG409530.3845292176666542No Hit
GGGGGG308440.28961050935731897No Hit
GGGGGT302930.2844368810777222No Hit
GTTGGG235250.2208885758212595No Hit
TGGGTG202840.19045712526922115No Hit
GGTGGG199980.18777172111683518No Hit
GGGGTG193750.18192204703663775No Hit
AGGTTG193140.18134928601112885No Hit
GGCGGG186260.17488929280538912No Hit
CGGGGG182800.17164051715250261No Hit
GGGTTT176930.16612886597260548No Hit
TGGGGG172520.1619880854439264No Hit
GGGAGG172510.1619786959189181No Hit
GGGGGA167640.15740599723985524No Hit
GGGGTT167610.1573778286648302No Hit
GGGGGC166550.1563825390139459No Hit
GGGTTG165910.15578160941341196No Hit
GGGCGG160940.15111501548426567No Hit
GTGTGG159330.14960330195792254No Hit
GGGGCC155720.14621368342991084No Hit
GGGGCG155690.14618551485488582No Hit
GGTTGG149860.1407114217750221No Hit
GGAGGT148660.139584678774021No Hit
GGAGGG146300.13736875087205214No Hit
TGCGGG145220.13635468217115113No Hit
GTGGGG143440.13468334671966614No Hit
GGGGCT140930.13232657594257216No Hit
AGCGGG140620.13203550066731354No Hit
GTGGGT140010.13146273964180466No Hit
GTGTTG137070.1287022192893519No Hit
GGGTGT136950.12858954498925182No Hit
GTGGTG136770.12842053353910166No Hit
TGGAGG136640.1282984697139932No Hit
AGGGGG135310.12704966288788364No Hit
GGGGAG133560.12540649601142367No Hit
GGCCGG132080.12401684631018897No Hit
GGGCTT131060.12305911475933803No Hit
GGAGGC130630.12265536518397929No Hit
GTGGCT130140.1221952784585705No Hit
GGATTC128820.12095586115746929No Hit
TTGGGG127720.11992301340655159No Hit
GTACTG126100.11840191035520009No Hit
GTGTGT123830.11627048817830633No Hit
GGGTAG122450.11497473372715505No Hit
CGTGGG122020.11457098415179631No Hit
GCGGGG121290.1138855488261873No Hit
ATTGGT121270.11386676977617062No Hit
GGTGTA118440.11120953419880968No Hit
CGGGTT118050.1108433427234843No Hit
GTGAGT118000.1107963950984426No Hit
GGGTGG117440.1102705816979754No Hit
TGTGGG116720.10959453589737475No Hit
GGGGAT116490.10937857682218287No Hit
AGTTTG116440.10933162919714115No Hit
GGTCGG116390.10928468157209945No Hit
GATGGG115290.10825183382118175No Hit
GGTTTG114770.10776357852074793No Hit
TGTAGG114200.1072283755952724No Hit
GTACGG114060.1070969222451556No Hit
TGGTAT113630.10669317266979689No Hit
GTGGTT113560.1066274459947385No Hit
CTGGGT113290.10637392881951324No Hit
GTGGGA112710.10582933636902937No Hit
TAGGGG111170.1043833495177446No Hit
GTAGTG110750.10398898946739421No Hit
TGGGAA110690.10393265231734415No Hit
TGTTTG110320.1035852398920355No Hit
GTAGCG109490.10280590931634305No Hit
TTTGGG108490.1018669568155088No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)