FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26143545
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1034160.3955699198406337No Hit
GGGGGT565910.21646261056027408No Hit
GGGGTG535970.20501045286704617No Hit
GGTGGG531930.20346513833529464No Hit
GGGCGG523070.20007615646615637No Hit
GGGTGG505820.1934779694184549No Hit
GTGGGG505260.19326376740415274No Hit
TGGGGG487080.18630985201127084No Hit
CGGGGG467120.17867508021578557No Hit
GGCGGG454430.17382110957025912No Hit
GGGGAG442580.16928844194618595No Hit
GCGGGG433340.1657541087101998No Hit
AGGGGG406230.1553844361963919No Hit
GGGGCG395480.15127252252898374No Hit
GGGTGT395440.151257222385105No Hit
GAGGGG390470.14935617950817304No Hit
TTGGGG388570.14862942267393348No Hit
GGAGGG383150.14655625317836582No Hit
GGGGGC379850.14529399130837076No Hit
GGGAGG371240.14200063533847457No Hit
GGGGGA366540.14020286843272403No Hit
TGTGGG358970.13730731620367476No Hit
GTGGGT336600.12875071073949612No Hit
GGTTGG335570.1283567320346189No Hit
GGGGTT318590.12186182095809883No Hit
GGTGGT310590.11880179218235325No Hit
GGCTGG307740.11771165693099386No Hit
GGGCGT298940.1143456252776737No Hit
TAGGGG294520.11265495937907426No Hit
TGGGGT294130.11250578297625667No Hit
GGTGTT292980.11206590383974324No Hit
GTCGGG291590.11153422383995745No Hit
TGGGGA288690.11042496340874966No Hit
TGGCGG287740.11006158499162987No Hit
GGCGGT286410.10955285520766216No Hit
GGGTTG284360.10876872283387734No Hit
GGCAGG281980.10785836427309303No Hit
GGTCGG280950.10746438556821579No Hit
GGCGCG280890.1074414353523977No Hit
GTTTGG278490.10652342671967402No Hit
TGTTGG278290.10644692600028037No Hit
GGATGG276870.10590377089258554No Hit
GCTGGG275140.10524203966983053No Hit
GTGTGG269820.10320712053395972No Hit
TGGAGG269680.10315357003038417No Hit
GGCCGG269550.10310384456277831No Hit
TGCGGG268150.10256833952702284No Hit
GTGGTG266050.10176508197338961No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)