FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13627945
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG577830.4240037657915408No Hit
GCAATT539430.39582637000662974No Hit
GGGCGG453720.33293354207108994No Hit
GGGTGG341140.25032387494959807No Hit
AGGGGG314050.23044560276696155No Hit
GTGGGG311730.22874321843828985No Hit
GGCGGG305540.22420108094067004No Hit
GGGGAG277620.2037137660887243No Hit
GCGGGG270610.1985699237852809No Hit
GGGGGC256250.18803275181988188No Hit
GGTGGG255620.1875704664202857No Hit
GGGGCG253740.18619094808498274No Hit
CGGGGG249020.18272747651975407No Hit
GGCCGG240490.17646827896649128No Hit
GGAGGG234470.17205088514812764No Hit
TGGGGG234410.17200685796721368No Hit
GGGGGA232160.17035583868294155No Hit
TTGGGG226910.16650346035297325No Hit
GAGGGG213010.1563038301079143No Hit
GCTGGT207630.15235605955263248No Hit
CGGGCG201080.14754975896952915No Hit
CGAAGA196770.14438713980721232No Hit
GGGGGT193890.142273835123344No Hit
ATGGGG191040.1401825440299326No Hit
GGCGCG190400.13971292076685077No Hit
CGGCGG190070.1394707712718242No Hit
GGGGTG189130.1387810121041727No Hit
TGGTGG188660.13843613252034698No Hit
GGGCAG182300.1337692513434711No Hit
TGTGGG181590.13324826303598966No Hit
GGCTGG173370.1272165392507821No Hit
TAGGGG167130.12263771243573407No Hit
TTCGGG166420.12211672412825265No Hit
CGCGGG164930.1210233824688902No Hit
CTGGGG163290.11981997285724297No Hit
GGCGTG163180.11973925635890077No Hit
GGGCGC163010.11961451267964467No Hit
TGCGGG161720.1186679282899953No Hit
GTGGGA160600.11784608757960206No Hit
CAGGGG158950.11663534010446916No Hit
GGGAGG155550.11414046651934681No Hit
TGGCGG153480.11262152877781646No Hit
GTCGGG149190.10947358534247092No Hit
GCAGGG146120.10722086125237518No Hit
GCTGGG142270.10439578381039841No Hit
GGGCCG142010.1042049993597714No Hit
GGGGAA141010.10347121301120601No Hit
GCGGAG140510.10310431983692334No Hit
GGCGGC140010.10273742666264063No Hit
GTAGGT139850.10262002084687016No Hit
CGTGGG139170.1021210461298457No Hit
GGTAGG138580.10168811218419212No Hit
GGGGCA138420.10157070636842165No Hit
GTGGTG138330.10150466559705076No Hit
GGAAGG137510.10090296079122714No Hit
GTTGGG137290.10074152779454275No Hit
ACGGGG136970.10050671616300183No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)