FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7870822
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCG679820.863721730716309No Hit
GCAATT282400.3587935288080457No Hit
GGGAGG125900.1599578798758249No Hit
GTGTGG111730.14195467766899061No Hit
GCGGGT108380.1376984513180453No Hit
TTGGGG103930.13204465810559557No Hit
GTTGGG100700.1279408935940871No Hit
GGTGGG99860.12687366071802922No Hit
GGGGGG98430.12505682379807342No Hit
TTGTTT97300.12362114147670979No Hit
GGGTAG96370.12243956222107424No Hit
CGGTTG94950.12063543045440488No Hit
GGGGGT92390.11738291121308549No Hit
GAGGAG92330.11730668029336706No Hit
GGGCTG91550.11631567833702756No Hit
AGCGCG90960.11556607429312973No Hit
TGTATT89840.1141430971250525No Hit
CGGGGG88820.11284717148983932No Hit
TGATTG88460.11238978597152877No Hit
GTTTTG88120.11195781075979104No Hit
GGGTGG86800.11028073052598572No Hit
TATTTT86470.1098614604675344No Hit
CGGGTG83310.10584663202903076No Hit
AGGGGG82990.10544006712386585No Hit
GCGGGG82580.10491915583912328No Hit
GGTTGG82140.10436012909452151No Hit
GTGGCG81950.10411873118207984No Hit
TTTAGG81560.1036232302039101No Hit
GGTGTT80660.10247976640813375No Hit
TGTTGG79350.10081539132761481No Hit
TGAGTG78840.10016742851000823No Hit
GGGGGC78820.10014201820343542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)