FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57909089
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG3497900.6040329869461425No Hit
CGGGGG1559730.26934113917765135No Hit
GGGGGT1434070.24764160941989607No Hit
GGGCGG1389230.239898438050027No Hit
GGGTGG1388130.2397084851395262No Hit
GGTGGG1360290.23490094965921499No Hit
AGGGGG1353930.23380267646759215No Hit
TGGGGG1345070.23227269211574023No Hit
GAGGGG1335540.2306270091729469No Hit
GGGGCG1327830.2292956119548004No Hit
GTGGGG1279610.22096876709630156No Hit
GGGGGC1245740.21511994429751777No Hit
GGGAGG1206480.20834035223728006No Hit
GGGGGA1202840.2077117807879865No Hit
GGGGTG1189540.2054150774155677No Hit
GCGGGG1136700.19629043033296553No Hit
GGCGGG1124340.19415605035679287No Hit
GGGGAG1117050.19289718061356484No Hit
GGAGGG1115790.19267959818880936No Hit
CAGGGG811060.14005746144616435No Hit
CCGGGG775590.13393234350483393No Hit
CGGGGT745590.12875180958208476No Hit
GGGGCT723440.12492684870245498No Hit
AGGGGT722580.12477834006333617No Hit
GGGTGT703780.12153187213841336No Hit
GGTAGG702490.12130910917973516No Hit
GGGCCG702180.12125557699586675No Hit
GGGGTT680150.11745133825192795No Hit
GGGCAG677160.11693501170429396No Hit
GGCCGG674840.11653438374760136No Hit
GTGTGG670690.11581774322162106No Hit
AAGGGG664540.11475573376745747No Hit
GGCGGT664070.1146745720693344No Hit
GGATGG658300.11367818271152563No Hit
GGGTAG651090.11243312772542494No Hit
CGGCGG650680.11236232709514735No Hit
CGTGGG648980.11206876350619158No Hit
GGTTGG645160.11140910885336151No Hit
GGGCGT642570.11096185609136416No Hit
GAGCGG640480.11060094556141266No Hit
GGGTTG639870.11049560803831673No Hit
CGGTGG639340.11040408527234818No Hit
TTGGGG639230.1103850899812981No Hit
TGGGGT633890.10946295494304874No Hit
TCGGGG630550.10888618883298268No Hit
GTGAGG628450.10852355145839024No Hit
GCCGGG626110.1081194698124158No Hit
GGCAGG623650.10769466603075037No Hit
GGGGCC623500.10766876336113662No Hit
GCGCGG622680.10752716210058147No Hit
AGAGGG620680.10718179317239822No Hit
AGGTGG619410.10696248390300184No Hit
GGGCTG617480.10662920288730497No Hit
ACGGGG616290.10642370837503591No Hit
GGTCGG612260.10572778998474659No Hit
GGGAGT610730.10546358275468641No Hit
GGAGGT610310.10539105527976791No Hit
GTTGGG608550.10508713062296662No Hit
GGCGCG606450.10472449324837418No Hit
CGGGTG605310.10452763295930971No Hit
GGTGGT604480.10438430485411367No Hit
GGGTCG602560.10405275068305772No Hit
GTGGTG601940.1039456863153209No Hit
TAGGGG599100.10345526243730065No Hit
TGGGTG597570.10319105520724044No Hit
CTGGGG596710.10304254656812162No Hit
TGGGGA596690.10303909287883979No Hit
TGAGGG596510.1030080096753033No Hit
GGCTGG596480.10300282914138055No Hit
GTGGGT596020.10292339428789839No Hit
GGAGTG590990.10205479143351745No Hit
GTGGCG590810.10202370822998096No Hit
ATGGGG589600.10181476002843008No Hit
GTAGGG589100.10172841779638427No Hit
CGGGGA586520.10128289187902784No Hit
GGAAGG583740.10080282906885307No Hit
GGTGTG580310.10021052135701877No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)