FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16960979
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG636970.37555025567804784No Hit
GGGGGT343710.2026475004774194No Hit
GGGGTG323080.19048428749307453No Hit
GGTGGG315890.1862451454010998No Hit
GGGTGG301960.1780321760907787No Hit
TGGGGG292140.1722424159595976No Hit
GGGGCG282620.1666295324108355No Hit
GTGGGG281500.16596919316980463No Hit
GGGGGC276200.1628443735470694No Hit
CGGGGG263510.1553624941107468No Hit
GGGGAG263230.1551974093004891No Hit
GAGGGG252220.1487060387257127No Hit
GGGGGA251130.14806338714292377No Hit
GGCGGG250190.14750917385134432No Hit
GCGGGG249460.14707877416745815No Hit
AGGGGG238580.14066405011172997No Hit
GGGCGG234380.13818777795786436No Hit
GGTGGT229070.1350570624490485No Hit
GGGAGG227350.1340429700431797No Hit
GGAGGG215850.12726270105045234No Hit
GGGTTG212230.12512839028926337No Hit
GGGGTA210510.12411429788339459No Hit
GGGGTT209530.1235365010474926No Hit
GGGTGT203930.1202348048423384No Hit
GTTGGG200670.1183127459800522No Hit
TGGGGT199700.11774084503023087No Hit
GCGGGT187070.11029434091039203No Hit
ATCTCG185160.10916822666899122No Hit
TGGGTG184120.10855505451660545No Hit
GGCTGG183990.10847840799755723No Hit
TTGGGG181000.1067155380594481No Hit
GTGTGG180030.10614363710962675No Hit
GGGGAT173720.10242333299274764No Hit
GGTTGG173530.10231131115721562No Hit
TGTGGG172700.10182195261252314No Hit
GGGGCT172660.1017983690682006No Hit
GTGGGT172450.10167455546050731No Hit
GGGTAG170100.1002890222315587No Hit
GGGATG169840.10013572919346224No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)