FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33152109
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG865640.26111159323227373No Hit
GGGGGT673100.20303384016986675No Hit
GGGGTG651270.19644904039136696No Hit
GTGGGG614240.1852793136026429No Hit
CGGGGG497900.15018652357833404No Hit
GGTGGG481910.14536330101955203No Hit
TGGGGG442970.13361744195520112No Hit
GGGTGG442850.13358124516301512No Hit
GGGGCG437980.13211225868013404No Hit
GTTGGG408060.12308719182842938No Hit
GGGCGG404860.12212194403680321No Hit
GTAGGG397020.1197570869473191No Hit
GCGGGG391650.11813728049699644No Hit
GGGGGA389350.11744350864676513No Hit
GGGGTT384550.11599563695932587No Hit
GGCGGG376090.1134437631102142No Hit
GGGGGC371870.11217084258500719No Hit
GGTGGT365360.11020716660891769No Hit
GTCGGG365040.11011064182975508No Hit
TGTGGG363810.10973962470984877No Hit
GTGGGT353460.1066176513838079No Hit
GAGGTG350660.10577305956613499No Hit
TGGGGT348410.10509436971264785No Hit
TAGGGG343830.10371285881088291No Hit
GTGAGG338820.10220164273711818No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)