FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12839495
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG534360.41618459292986215No Hit
GGGGGT312830.24364665432713672No Hit
GTGGGG308520.24028982448297226No Hit
GGGTGG306560.23876328469305064No Hit
TGGGGG283770.22101336540105354No Hit
GGGGTG254520.1982320955769678No Hit
GGTGGG252700.19681459434346912No Hit
AGGGGG243470.1896258380878687No Hit
GGGAGG224630.17495236378066273No Hit
CGGGGG222990.1736750549768507No Hit
TGGGGT217650.16951601289614582No Hit
GCGGGG201380.156844174946133No Hit
GGGGTT199910.15569927010369175No Hit
GGAGGG197060.15347955663365265No Hit
GGCGGG196460.15301224853469703No Hit
GGGGCG195100.151953016843731No Hit
GGGGAG192440.14988128427169448No Hit
GGGGGA189540.14762262846007573No Hit
TTGGGG186270.14507579932076767No Hit
GAGGGG184940.1440399330347494No Hit
GGGCGG179000.13941358285508892No Hit
TGTGGG178280.1388528131363422No Hit
GTTGGG169760.1322170381311726No Hit
GGGGGC169510.13202232642327444No Hit
GTGGGT162030.12619655212296124No Hit
CGGGGT161690.12593174420021971No Hit
GGGTGT155380.12101722069286992No Hit
TGGCGG153550.11959193099105533No Hit
AGGTGG150690.11736442905270028No Hit
GGTTGG149290.11627404348847054No Hit
GGGTTG149260.11625067808352277No Hit
AGGGGT148570.1157132737697238No Hit
TGGGAG145370.11322096390862725No Hit
GTGTGG144010.11216173221766121No Hit
CAGGGG143990.11214615528102935No Hit
TGAGGG143300.11160875096723041No Hit
GGGTAG141200.10997317262088578No Hit
CGGTGG140760.10963048001498502No Hit
CTGGGG138520.10788586311221743No Hit
ATGGGG137070.10675653520640804No Hit
GGTGGT136000.10592316909660389No Hit
TGGTGG135660.10565836117386238No Hit
GGGGCT132880.10349316698203471No Hit
GGGGAT132340.10307258969297467No Hit
TCGGGG132220.10297912807318357No Hit
GCTGGG132060.10285451258012875No Hit
GAGGGT129330.10072826072988074No Hit
TGGGCG128660.10020643335271365No Hit
GCGGGT128420.1000195101131314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)