FastQCFastQC Report
Thu 9 May 2024
EGAF00005483791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16570702
Total Bases99.4 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG518450.31287147641662977No Hit
GGGGGT331670.2001544653931982No Hit
TGGGGG282860.17069886357258732No Hit
GGGAGG262110.15817676281910084No Hit
GGTGGG258260.15585338508893587No Hit
GCGGGG257580.1554430222690626No Hit
CGGGGG249230.1504040082309126No Hit
GGTGGT240410.14508136106726197No Hit
GTTGTG238840.14413390573314275No Hit
GGGGGC236400.14266142737947976No Hit
GGAGGG236220.14255280192716036No Hit
GGGTGG234130.1412915397307851No Hit
GGGGTG233430.14086910741620964No Hit
TGCGGG226940.13695255638536014No Hit
GTGGGG213720.12897462038723526No Hit
GGGGGA212620.1283107981786167No Hit
GCTGGG210100.1267900418461451No Hit
GGGGCT200280.12086391994738666No Hit
TGGGGT200280.12086391994738666No Hit
GAGTGG197790.11936126785696828No Hit
GGCGGG193180.1165792493281214No Hit
GAGGGG193120.11654304084401494No Hit
GGGCAG191280.1154326473314166No Hit
GAGGTG189080.11410500291417949No Hit
GGGCGG186200.11236699567706908No Hit
GGGGCG185700.1120652583095152No Hit
GGCCGG184460.11131694963798155No Hit
AGGGGG183640.11082210035519317No Hit
GTATTT180030.10864355656145407No Hit
TGGGGA178800.10790128263727149No Hit
GTGGGT175670.10601240671638412No Hit
GGGTTG174540.10533048026571235No Hit
GGGAAT173710.10482959623557288No Hit
ATCTCG173100.10446147664715713No Hit
GGTTGG169230.10212602942229002No Hit
GGGGTA168880.1019148132650023No Hit
GAGGGT168590.10173980559182103No Hit
TTTGTG168330.10158290216069302No Hit
GTGGGA168250.10153462418188439No Hit
GTTGTT167050.10081045449975505No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)