FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4641043
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG130970.2821994969665224No Hit
GGGGTG80790.1740772494458681No Hit
GGTGGG79260.17078057669364408No Hit
TGGGGG78780.16974632641843657No Hit
GGGGGT76010.16377784045525973No Hit
GGGTGG73830.15908062045535884No Hit
GTGGGG72140.155439197611399No Hit
CGGGGG70970.15291821256558064No Hit
AGGGGG67040.14445028843731894No Hit
GGGGCG66450.14317902247404302No Hit
GGCGGG64810.1396453340337506No Hit
GGGGGC64420.13880500568514448No Hit
GCGGGG63950.13779230229067044No Hit
GGGCGG62190.13400005128157616No Hit
GGAGGG60010.12930283128167527No Hit
GAGGGG56610.12197689183228856No Hit
GGGGAG56450.12163214174055273No Hit
GGTGGT55340.11924043797913529No Hit
GTGGGT54110.11659017164891598No Hit
GGGGGA53220.11467249926363536No Hit
GGGTGT52450.1130133894471566No Hit
GGGTTG52420.11294874880495613No Hit
GGGGTT52170.11241007678661886No Hit
TGGTGG50560.10894102898852692No Hit
GGGAGG49920.10756202862158355No Hit
ATGGGG49070.10573054375923688No Hit
GTGGTG47360.10204602715381003No Hit
TGGGGT47170.10163663641987372No Hit
GGTGTG47090.1014642613740058No Hit
GTGTGG46600.10040846421806478No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)