FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6600303
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG346600.5251274070296469No Hit
GGGGGT222230.33669666377437524No Hit
TGGGGG196890.29830448693037276No Hit
GGGGTG181290.2746692083681613No Hit
GTGGGG179250.2715784411715644No Hit
GGGTGG177190.2684573723357852No Hit
GGGGGC165020.25001882489334204No Hit
AGGGGG161350.24445847410338584No Hit
CGGGGG160960.24386759213933057No Hit
GGCGGG156210.236670952833529No Hit
GGGGTT156200.23665580201393785No Hit
GGGTGT146490.22194435619092034No Hit
GGTGGG144880.21950507423674337No Hit
GGGGGA139390.2111872742811959No Hit
GGGCGG139380.21117212346160472No Hit
GGGAGG134820.20426334972803523No Hit
GAGGGG124210.1881883301418132No Hit
GCGGGG121180.18359763180569136No Hit
GGGGAG120970.18327946459427696No Hit
GGAGGG120160.18205224820739288No Hit
TGGGTG119210.18061292034623258No Hit
GGGGCG112880.17102245154502754No Hit
TGGTGG109700.16620449091503828No Hit
GGTGGT108810.16485606797142494No Hit
GGTTGG107690.1631591761772149No Hit
GGGGCC107590.16300766798130328No Hit
TTGGGG104900.15893209751128093No Hit
GTGCGG103630.15700794342320346No Hit
GTGGGT103570.1569170385056565No Hit
TCGGGG103550.15688673686647417No Hit
GGGTTG99840.15126578279815336No Hit
TGACAT97930.14837197625624157No Hit
GTGTGG94720.14350856316747881No Hit
CTGGGG94190.14270556972914727No Hit
TAGGGG93360.14144805170308092No Hit
AGGTGG92370.13994812056355596No Hit
TGAGGG92350.1399178189243736No Hit
TGGGGT91220.1382057763105724No Hit
GGCTGG87980.13329691076303618No Hit
GGGTGC87900.1331757042063069No Hit
CGGTGG86550.13113034356150013No Hit
CGGGGT85860.13008493700971No Hit
GCGGTG84730.1283728943959088No Hit
AGGGGA84580.12814563210204138No Hit
GGGGCT84310.12773655997308003No Hit
GGGGAT83340.12626693047273738No Hit
TGTGGG82980.12572150096745557No Hit
GTGGTG81970.1241912681887483No Hit
GTTGGG81780.12390340261651625No Hit
GGGGTA79870.12100959607460446No Hit
GGGTGA78870.11949451411548834No Hit
TGGAGG78840.11944906165671486No Hit
AGGGGT77700.11772186822332248No Hit
CGTGGG77580.11754005838822855No Hit
GGTGTT77240.11702493052212906No Hit
GAGGGT76830.11640374691889144No Hit
GATGGG76500.11590376987238313No Hit
GCTGGG76450.11582801577442732No Hit
GGGTCG76430.115797714135245No Hit
GGTTGT76400.11575226167647153No Hit
GGCGGT75880.11496441905773114No Hit
GGGAGT75260.11402506824307913No Hit
GGTGGC74600.11302511415006251No Hit
TGCGGG74440.11278270103660393No Hit
GTCGGG74190.11240393054682489No Hit
TGGCGG74110.11228272399009562No Hit
CCGGGG73530.11140397645380826No Hit
AGTGGG73090.11073734039179715No Hit
ATGGGG72630.11004040269060375No Hit
CGGGGC72440.10975253711837168No Hit
GGGCTG71530.10837381253557601No Hit
TGGGGA71260.10796474040661466No Hit
GCGGGT70940.10747991417969752No Hit
GTGCTG70810.10728295352501241No Hit
GCGGGC70680.10708599287032732No Hit
GTGGAG70180.10632845189076925No Hit
TGGGCG69670.10555576009162004No Hit
ACGGGG69550.1053739502565261No Hit
CGGAGG69540.10535879943693494No Hit
TGGGGC69400.10514668796265869No Hit
CGGGGA69280.10496487812756475No Hit
GGGGTC69260.10493457648838242No Hit
GTGGGC68360.10357100272517791No Hit
GGTGTA68290.10346494698803979No Hit
GGTGTG68240.10338919289008398No Hit
CAGGGG67690.10255589781257013No Hit
CTGGGT67620.10244984207543198No Hit
GCGGTT67480.10223773060115574No Hit
GGCCGG67450.10219227814238226No Hit
GGGTAG67160.10175290437423856No Hit
GGCAGG66140.10020752077594013No Hit
TTGTGG66040.10005601258002852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)