FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6823731
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG549300.8049848389392841No Hit
GGTGGG267150.3915013648691603No Hit
GGGGGT209780.3074271245452085No Hit
TGGGGG188280.27591943469049407No Hit
GGGCGG185140.2713178464977591No Hit
GGGGCG183680.26917825453553196No Hit
GGGAGG169280.248075429702607No Hit
GGGGTG167270.24512982706967784No Hit
GGGTGG167110.24489535123820091No Hit
GGGGAG164550.24114373793456984No Hit
TGGGTT163790.2400299777350543No Hit
CGGGGG147960.21683152515830414No Hit
TGTGTG145620.21340231612295385No Hit
TTGGTG144860.21228855592343837No Hit
GAGGGG144280.21143858103433444No Hit
AAGGGT143980.21099893885031515No Hit
GGAGGG142640.20903520376169574No Hit
GGGTGC142610.20899123954329382No Hit
GGGGGA135390.19841051764789672No Hit
GGGGTT133450.19556749819123878No Hit
TCGGGG131330.19246069342416927No Hit
TGTGGT128730.18865046116266893No Hit
TCATAG123170.1805024260188451No Hit
GGTTGG122420.17940332055879693No Hit
AGCACA122310.17924211842465654No Hit
GGATTG120630.17678012219414863No Hit
GCGGGG120190.17613531365758703No Hit
TGAGGG117050.17153372546485202No Hit
GTGGAA116450.17065444109681346No Hit
TGGCTG112160.16436755786533788No Hit
TAAAGG111720.16372274932877628No Hit
GGAAGG109380.160293540293426No Hit
AGAATT109070.1598392433699394No Hit
GGGGAA109000.15973666019366825No Hit
ATGAGG108080.15838842416267582No Hit
CGGATT107620.1577143061471796No Hit
GGGGGC106290.1557652257980275No Hit
GTTGTG104350.15292220634136955No Hit
GCATTG103360.15147138713410596No Hit
GTAGAG102340.14997660370844043No Hit
GGGATG101590.14887749824839225No Hit
TTCGGG100460.14722151268858633No Hit
GGGTTG100340.14704565581497864No Hit
TAGGTT99480.14578534822079006No Hit
GTGTGT99410.1456827650445189No Hit
GCAATT99200.14537501551570542No Hit
TGGATG98470.14430521953459186No Hit
TTGGGG98010.14363110151909564No Hit
GGGAGT97070.14225355600916859No Hit
GCGGTG96170.1409346294571108No Hit
TTCTTT96160.14091997471764348No Hit
TTGTGG96140.14089066523870886No Hit
CTGTTT95940.14059757044936266No Hit
GGGGCA95930.14058291570989537No Hit
AGGGGA94190.1380329910425836No Hit
GTACAC94060.13784247942950856No Hit
GTTATT93160.13652355287745077No Hit
TAGTGG93110.13645027918011424No Hit
TTATTG93090.13642096970117962No Hit
AGAGGG91980.13479429362030831No Hit
GTTGAG91710.13439861565469097No Hit
AGATGG91220.1336805334207928No Hit
TGATTG89750.13152628671909838No Hit
GGGCGT89460.13110129927454642No Hit
GAGGGC89260.13080820448520025No Hit
CGTACG89180.1306909665694618No Hit
GAGGCA89130.13061769287212524No Hit
GCGGAG88840.13019270542757327No Hit
GGTAGG87970.1289177430939174No Hit
TGCGGT87250.12786260185227113No Hit
AGGGAT86870.1273057217525134No Hit
GAGGTG86460.1267048774343537No Hit
TAGAGG85860.1258255930663152No Hit
TAAGAG84450.12375927480142461No Hit
TGGGTC84260.12348083475154574No Hit
AGTTTA84040.12315843048326496No Hit
TCCGGG83980.1230705020464611No Hit
AAAGGA83800.12280671673604952No Hit
GGTCGG83020.12166364705759942No Hit
GGTGGT82730.12123865961304746No Hit
GGATCG82520.12093091008423397No Hit
GTATGG82380.12072574373169166No Hit
ATTAGT82210.1204766131607474No Hit
GGGTAG81760.11981714988471849No Hit
GGAGAG81590.11956801931377423No Hit
TAGGAG81500.11943612665856847No Hit
GGGTGT81340.11920165082709151No Hit
GTGTGG81060.11879131812200686No Hit
GTGTCG80890.1185421875510626No Hit
GGTTAG80790.11839564015638951No Hit
GGTGAG80780.11838098541692221No Hit
GATAGG80730.11830771171958565No Hit
GGGTAA80510.11798530745130488No Hit
GCCAGT80430.1178680695355664No Hit
GGCGGG80210.11754566526728559No Hit
CGGAGT79920.11712067782273362No Hit
AGCGGG79680.11676896407551822No Hit
TGTTGT79480.11647586928617204No Hit
GGTGTC79230.11610950079948931No Hit
GTTGGG79210.1160801913205547No Hit
GATATT79140.11597760814428353No Hit
GGGACT78380.11486384794476806No Hit
CGGATG78150.11452678893701994No Hit
TGGGAG77770.1139699088372622No Hit
TTATTT77300.11328113608229867No Hit
TGTAGG77090.11297338655348518No Hit
GGGGTC76730.11244581593266205No Hit
ATTGGG76660.11234323275639088No Hit
TGGTGC76660.11234323275639088No Hit
GCGTGG76660.11234323275639088No Hit
GTGGGG76500.11210875692491395No Hit
TGGCCG76400.11196220953024086No Hit
CGAGGG76330.11185962635396969No Hit
ATGTTC75650.11086310407019268No Hit
GTATTG75620.11081913985179076No Hit
AAGGAG75530.11068724719658497No Hit
GGCGAG75060.10999847444162145No Hit
GGAAGT74980.109881236525883No Hit
AAGTGG74050.10851834575542324No Hit
GCGGAT74010.108459726797554No Hit
GTCTGG74000.10844507205808669No Hit
GGTGGA73950.10837179836075016No Hit
GGAGAC73810.10816663200820782No Hit
GGCTGA73730.10804939409246934No Hit
GTGTTG73640.10791750143726359No Hit
GGGTGA73390.10755113295058084No Hit
TTTGGG73200.10727269290070197No Hit
AGCGCT73130.1071701097244308No Hit
GGATAG72800.10668650332200962No Hit
TAGCGG72650.10646668222999997No Hit
TGGTGA72550.10632013483532689No Hit
AGACAG72270.10590980213024223No Hit
GAGTGC72270.10590980213024223No Hit
GTGAGG72170.10576325473556916No Hit
ATGTTA72130.10570463577769991No Hit
TTGGGT72020.10554343364355952No Hit
GACGGT71830.10526499359368065No Hit
GTAATT71500.10478138719125946No Hit
AAAGAG71410.10464949453605366No Hit
AGTGTA71370.10459087557818443No Hit
GAGGGT71250.10441501870457671No Hit
CTGGTG70860.10384348386535167No Hit
TTCAGT70750.10368228173121127No Hit
AAGGGA70180.10284696158157465No Hit
CTGTGG69630.10204095091087266No Hit
TGGGGC69480.10182112981886303No Hit
TTTCGG69350.101630618205788No Hit
TCTCTT69180.10138148763484374No Hit
GCTGGG69150.10133752341644182No Hit
TTGTTT69110.1012789044585726No Hit
GGGGTA68990.10110304758496487No Hit
CGGTGG68760.10076598857721678No Hit
CATGGC68640.10059013170360907No Hit
GGAGGT68460.1003263463931975No Hit
GGCTGG68430.10028238217479558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)