FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25448209
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG987970.3882277137852805No Hit
GGGGTG737350.28974534121438567No Hit
GGTGGG679640.2670679103586425No Hit
GGGTGG624510.2454043033048023No Hit
TGGGGG550420.2162902701718616No Hit
GGGGGT529150.2079321181305922No Hit
GCGGGG483160.18986011942922978No Hit
GTGGGG478170.18789927416896018No Hit
GGGGGA476770.18734913722219115No Hit
CGGGGG463940.18230752506001505No Hit
GGCGGG463490.18213069532712498No Hit
GGGGCG463290.1820521043347294No Hit
GGGAGG446820.17558013611095383No Hit
GGTGTG445290.17497891501912768No Hit
GTGTGG441470.17347782706437218No Hit
AGGGGG430960.16934787041398475No Hit
GGTGGT418780.16456167897709423No Hit
GGAGGG411780.1618109942432491No Hit
TGGTGG409480.1609071978307No Hit
GGGCGG380460.14950364483410208No Hit
GTGGCG372140.14623425955044617No Hit
TGGGTG364690.143306745083711No Hit
GGGGGC362490.14244224416735968No Hit
GAGGGG362000.1422496962359905No Hit
AGGGTG353250.1388113403186841No Hit
GGGGAG341840.13432772420251657No Hit
TGGGGT334400.13140413928540118No Hit
GTGGGT322540.12674369343634362No Hit
GCGGGT322430.12670046839052604No Hit
GAGGGT320070.12577309468025824No Hit
GGGCGT319210.12543515341295727No Hit
GGCGGT312510.12280235516770552No Hit
GGGGCT310300.12193392470173442No Hit
GGCTGG306180.12031495025838558No Hit
GGGTAG304560.1196783632199814No Hit
GGTTGG299990.11788255904374252No Hit
GGGGTT297000.11670762370742868No Hit
GTCGGG296790.11662510316541334No Hit
TAGGGG294130.11557984296655219No Hit
GGGTTG292860.11508079016484028No Hit
GGCGTG288190.11324569049240361No Hit
CGGGGT286900.11273877859145215No Hit
TGTGGG286730.11267197624791592No Hit
TGAGGG285550.11220828939278202No Hit
TGGGCG280820.11034961242262667No Hit
GATGGG280100.11006668485000261No Hit
GGTGTT275850.10839662626159663No Hit
TGCGGG273770.10757927994068267No Hit
AGTGGG273530.10748497074980798No Hit
GGTCGG272180.10695448155113785No Hit
GGTAGG270540.10631003541349413No Hit
GGCGCG267730.1052058319703363No Hit
GTTGGG267160.10498184764200891No Hit
GTGCGG266000.10452601988611458No Hit
GGGTGT262240.10304850922907777No Hit
GCGTGG260600.10240406309143407No Hit
GGGGAT260420.10233333119827805No Hit
GGGTCG259200.10185392614466503No Hit
GACGGG257190.1010640866710895No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)