FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8191933
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG883201.0781338177448472No Hit
TGGGGG372530.4547522544434873No Hit
GGGGTG340700.41589695618848443No Hit
AGGGGG309970.3783844423532272No Hit
GGGTGG295870.3611723875183061No Hit
GGCGGG255830.31229503463956554No Hit
GGGGGT250730.3060693977843813No Hit
AGGTGG236360.28852775041006806No Hit
GGGCGG231360.2824241848657698No Hit
GGGGAG223620.27297586540319607No Hit
GGAGGG217370.2653464084728232No Hit
GGGGGC215430.2629782250416354No Hit
GGTGGG213340.2604269346441188No Hit
TGGGGT208620.2546651687703012No Hit
GGGGTT207010.25269982066503716No Hit
GGGGCG206750.25238243525673365No Hit
GGGAGG200330.24454545709785466No Hit
GCGGGG195400.23852734147117657No Hit
CGGGGG189480.23130071986672743No Hit
GGGTGT181850.22198667884612824No Hit
GGCAGG181820.22195005745286248No Hit
GGGGGA181590.22166929343782477No Hit
GGGCGT178610.21803156837342297No Hit
GGGGTA176540.21550469223808347No Hit
GGCGGT176050.21490654281474225No Hit
GGGTGA175840.2146501930618817No Hit
GGGTAG174020.21242849520375717No Hit
GTGGGG171920.20986499767515188No Hit
GTGGTG164780.20114910607789394No Hit
CGCGGG164180.20041667821257816No Hit
TGGCGG156720.19131015842048513No Hit
GAGGGG155010.18922273900433512No Hit
GGGATG154460.1885513467944623No Hit
GCGGTG153980.18796540450220967No Hit
TCGGGG151810.18531645705598424No Hit
AGAGGG150900.18420560812692194No Hit
GCCGGA148290.18101954691279826No Hit
TGGGCG141020.17214496261138854No Hit
GAAGGG140970.17208392695594554No Hit
GGTGTG139870.17074114253619993No Hit
GTGTGG139810.17066789974966837No Hit
TGCGGG134720.16445447002557273No Hit
ACGGGG132630.16190317962805603No Hit
GAGGAG132380.16159800135084113No Hit
GGATGG128750.15716681276568056No Hit
GTGGAA128320.1566419061288709No Hit
GGGGTC126280.15415165138679723No Hit
TGTGGG124720.15224733893697617No Hit
AGGGTG121750.148621821003663No Hit
GGTCGA121740.1486096138725744No Hit
AGGGGA121320.14809691436685335No Hit
GGCCGG121050.14776732182746125No Hit
GGAGGT119480.1458508022465516No Hit
GAGTGG117710.14369014004386998No Hit
GGGTCG117280.14316523340706033No Hit
GGGGAC116880.14267694816351648No Hit
GGGCAG116760.14253046259045332No Hit
GGCTGG115740.14128533521941647No Hit
GGGCTG115490.14098015694220156No Hit
GGTTGT114860.14021110768361997No Hit
GGTGGT114840.14018669342144277No Hit
TAGGGG114350.13958854399810156No Hit
GCGGTT113810.13892935891931735No Hit
GGTGTA113060.13801382408767257No Hit
GGGGCT112770.1376598172861033No Hit
GGGGAA112240.1370128393384077No Hit
CGGGGT112230.1370006322073191No Hit
GTAGTG111680.13632923999744628No Hit
GCGGGT109680.13388781377972697No Hit
GGTTGG109540.1337169139444866No Hit
GGTCGG109500.1336680854201322No Hit
GCCGGG109470.13363146402686643No Hit
AGGGGT109400.13354601410924624No Hit
TGGAGG108800.13281358624393047No Hit
GGGGCA107750.13153183747962782No Hit
GTTGGG107740.13151963034853922No Hit
GATGGT107580.1313243162511217No Hit
GCGTGG107230.1308970666630208No Hit
GAGGTG104900.1280528051193778No Hit
GTGGGT104540.12761334840018834No Hit
TAAGGG102850.1255503432462155No Hit
GGTAAG102120.12465922267674798No Hit
GGGCGA100830.123084502766319No Hit
TGGTGG100580.12277932448910411No Hit
CGAGGG100400.12255959612950935No Hit
CGAGTT99560.12153419711806726No Hit
AGGTGA99290.12120460457867514No Hit
GAGGCG98970.12081397638384005No Hit
AGGAGG98780.12058204089315672No Hit
TGTGGT98380.12009375564961285No Hit
GTAGGG97830.11942236343974004No Hit
GATGGG97130.1185678642635383No Hit
GGGGAT96660.11799412910237425No Hit
GGCGTG96390.11766453656298213No Hit
GAGTAG96350.11761570803862777No Hit
AGCGGG95890.11705418000855232No Hit
TGAGGG95470.11654148050283127No Hit
TGAAGG95120.11611423091473039No Hit
TGAGGA94390.11522311034526282No Hit
GGGTGC94090.11485689641260494No Hit
TGGTAA93730.11441743969341546No Hit
TGAGTG93240.11381929027007424No Hit
CTTGGG92430.11283051265189792No Hit
GGTGGC92050.11236664167053123No Hit
GGAGTG91660.11189056355807597No Hit
AGGGAA90840.11088957880881105No Hit
GTCGGT90570.11055998626941896No Hit
TGGGGA89900.109742108486483No Hit
TAGGTG89740.10954679438906544No Hit
GAGTTG89630.10941251594709088No Hit
GTTACG89320.10903409488334438No Hit
GCGGTA88490.10802090300299086No Hit
GGTGAG87340.10661708292780227No Hit
GTATGG87170.10640956169929612No Hit
GTCGGG86790.10594569071792946No Hit
GAGGGT86370.1054329912122084No Hit
GTAAGG86300.10534754129458823No Hit
GAGAGG86290.10533533416349963No Hit
CGGGGA86270.10531091990132244No Hit
TGGGTT85990.10496912023084173No Hit
ACGGTG85750.10467614908471541No Hit
CTGGGG85500.10437097080750049No Hit
GAGGTT85350.10418786384117157No Hit
TGGGTG85240.104053585399197No Hit
GTGAGG85210.1040169640059312No Hit
TGGTAG85150.10394372121939961No Hit
GACGTG84970.10372399285980488No Hit
TGTTTT84960.10371178572871628No Hit
GAAGTG84860.10358971441783033No Hit
GGTGTT84840.10356530015565313No Hit
GGTAGG84720.10341881458258996No Hit
ACGCTT83940.10246665835767943No Hit
TGGCGT82920.10122153098664258No Hit
TGTAGG82820.10109945967575662No Hit
TGGAGC82760.10102621688922506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)