FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8245284
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG194710.23614711148821557No Hit
GTGGGG142790.17317778259669406No Hit
TGGGGG142260.17253499091116814No Hit
GGGGTG142020.17224391543092998No Hit
GGGTGG137610.16689540348155382No Hit
GGGGGT136370.16539151350032333No Hit
CAATTT133010.16131645677698914No Hit
GTGGGT115980.14066222582508983No Hit
GGTGGG115130.13963133349924636No Hit
GGTGGT113660.13784849618278763No Hit
AGGGGG111750.1355320204858923No Hit
GGGGTT110650.13419792453480073No Hit
GGTGTG108610.1317237829527764No Hit
GGGTTG107290.13012286781146654No Hit
TTGGGG106190.128788771860375No Hit
GTGTGG105190.12757595735938265No Hit
GCGGGG102800.124677330702011No Hit
TTGTGG101710.12335536289592935No Hit
GGTTGG100420.12179083218964926No Hit
GTTGGT100280.12162103815951034No Hit
TGGGTT100040.12132996267927218No Hit
TTTTTT99900.12116016864913325No Hit
GGAGGG99430.12059014583366687No Hit
GTTGGG97900.11873453964714861No Hit
TGGGGT95690.11605421959995557No Hit
GTGTGT95460.11577527226472734No Hit
GGGTGT95130.11537504347939986No Hit
GTGGTG94280.1143441511535564No Hit
CGGGGG93230.11307069592751444No Hit
TGTGGG92130.11173659997642288No Hit
GGGGGA91960.11153042151125418No Hit
GGTTTG91770.11129998675606564No Hit
GAGGGG90140.10932309911944817No Hit
GTGAGG88040.10677618866736427No Hit
TGGTGG87910.10661852278223527No Hit
GTTTGT87620.10626680657694751No Hit
GTTTGG87130.10567252747146128No Hit
TTTGGT85940.10422927821528039No Hit
GGTTGT85430.10361074281977432No Hit
TTGGGT83700.1015125737330576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)