FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6117758
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG223390.36515010891244803No Hit
GGGGGT127350.2081644942477293No Hit
GGGTGG120720.19732719077805955No Hit
CGGGGG120510.19698392777223292No Hit
GGGGTG118360.19346956842686486No Hit
GTGGGG118320.1934041849971836No Hit
GGTGGG110780.18107940850226506No Hit
AGGGGG109470.1789381011802036No Hit
TGGGGG108590.17749966572721576No Hit
GGGGCG108140.17676410214330152No Hit
GGGCGG103490.1691632784428544No Hit
GGGGGC103330.16890174472412933No Hit
GGCGGG103270.16880366957960743No Hit
GCGGGG98240.1605817032971883No Hit
GGGGGA88420.14453007131043757No Hit
GAGGGG88370.14444834202333598No Hit
GGAGGG86300.1410647495373305No Hit
GGGAGG86260.14099936610764924No Hit
GGGGAG85040.13900517150237066No Hit
GTGTGG80300.13125723508514067No Hit
GGGGTT77810.12718711658748189No Hit
GGGTGT75380.123215073234345No Hit
GTGGGT74060.12105742005486325No Hit
TGGGGT72470.11845842872503293No Hit
GGGGCT72010.11770651928369837No Hit
TGGTGG69090.11293352891696598No Hit
TTGGGG68380.11177297304012351No Hit
CTGGGG68210.11149509346397814No Hit
GGGTTG68190.11146240174913752No Hit
GTTGGG67520.11036722930197632No Hit
CGGGGT65730.10744132082373967No Hit
GTGGTG64740.10582308093912834No Hit
CGGTGG64370.10521828421457666No Hit
GGCGGT63690.10410676590999514No Hit
TGTGGG63020.10301159346283394No Hit
ATGGGG62390.101981804445354No Hit
CGGGTG61930.10122989500401945No Hit
GGTGGT61370.10031452698848171No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)