FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38094991
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1648000.4326028059699502No Hit
GTGGGG936340.2457908442608636No Hit
GGGTGG861850.2262370924303408No Hit
TGGGGG822440.2158919003288385No Hit
CGGGGG786270.20639721374392764No Hit
GGCGGG740830.1944691363754358No Hit
GGGGCG719270.18880959966626584No Hit
GGTGGG716890.18818484561395488No Hit
GCGGGG716450.18806934486478813No Hit
AGGGGG705610.18522382640804405No Hit
GGGCGG691980.1816459282009018No Hit
GGGGGC648070.170119478437467No Hit
GGGGGA643310.16886997033284507No Hit
GGAGGG632340.16599032665475627No Hit
GAGGGG607420.15944878422467668No Hit
GGGGAG606440.15919153255607804No Hit
GTGTGG596080.15647201491660676No Hit
GGGGGT553060.14517919166853196No Hit
GGGGTG530140.1391626526437557No Hit
TTGGGG490860.12885158576359815No Hit
TGGTGG477350.1253051877607741No Hit
GTTGGG476590.12510568646675885No Hit
GTCGGG474190.12447568238039483No Hit
GTAGGG464020.12180604006442736No Hit
ATGGGG459540.1206300324365479No Hit
CTGGGG454890.11940939951921763No Hit
GGCTGG452350.1187426451944824No Hit
GTGGCG445420.11692350839510633No Hit
GTGGGT444700.11673450716919713No Hit
GGTTGG443060.11630400437684837No Hit
CGGTGG430740.11306998340017983No Hit
GGGTAG425770.11176534993800104No Hit
TGTGGG422400.11088071920006491No Hit
GTGGTG417610.10962333604436342No Hit
GGGTCG409910.10760207293394555No Hit
GCCGGG402340.10561493504487245No Hit
TAGGGG401600.1054206837849102No Hit
GCGTGG398400.10458067833642486No Hit
GTGCGG397380.10431292659972015No Hit
GGGTTG394900.10366192237714401No Hit
AGGTGG394290.1035017963385265No Hit
TGCGGG392430.10301354317159439No Hit
GGCCGG386040.10133615729165024No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)