FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10020122
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1100961.098749097066882No Hit
GGGGGT444190.44329799577290574No Hit
GGGGTG431280.4304139211079466No Hit
GTGGGG425740.4248850463098154No Hit
GGTGGG410320.4094960121244033No Hit
GGGTGG409450.4086277592228917No Hit
TGGGGG385700.3849254530034664No Hit
AGGGGG379270.3785083654670073No Hit
GAGGGG374090.37333876773157054No Hit
GCGGGG356850.35613338839586983No Hit
GGGGGC350640.3499358590643906No Hit
GGGGAG346150.34545487569911826No Hit
GGCGGG346060.3453650564334446No Hit
GGGGCG344550.3438580887538096No Hit
GGGCGG342860.3421714825428273No Hit
GGAGGG338810.3381296155875148No Hit
CGGGGG330690.3300259218400734No Hit
GGGGGA312780.3121518879710247No Hit
GGGAGG301850.301243837150885No Hit
GGGTTG195740.19534692292169695No Hit
GTGGGT190030.1896483895106267No Hit
TTGGGG189890.18950867065291221No Hit
GGTGGT189290.18890987554842148No Hit
GGTGTG186550.1861753779045804No Hit
GTGTGG184010.18364047862890293No Hit
GTGGTG183610.18324128189257577No Hit
GGGTGT181090.18072634245371463No Hit
TGGGTG178980.17862057966958883No Hit
GTTGGG177880.17752278864468915No Hit
ATGGGG176780.17642499761978944No Hit
GGGGTT172650.1723032913172115No Hit
TGTGGG170210.16986819122561583No Hit
GGTTGG168770.16843108297483803No Hit
GGGTAG166640.1663053603538959No Hit
AGGTGG164480.16414969797772921No Hit
GTAGGG164320.16399001928319837No Hit
TAGGGG164260.16393013977274928No Hit
TGGTGG164110.1637804409966266No Hit
AGGGTG160410.16008787118560033No Hit
GGGGTA160200.15987829289902858No Hit
GTCGGG157940.1576228313387801No Hit
AGGGGT157750.1574332128890247No Hit
GAGGTG154580.15426957875363193No Hit
GGGATG151160.15085644665803472No Hit
AGTGGG150220.14991833432766588No Hit
GGGCGT149990.14968879620427777No Hit
GAGGGT149970.1496688363674614No Hit
GCGGGT149430.14912992077341972No Hit
GGGGAT149370.14907004126297063No Hit
GCGTGG149320.14902014167092975No Hit
GGATGG149070.1487706437107253No Hit
GGTGGA148930.14863092485301077No Hit
AAGGGG147950.14765289284900923No Hit
TGAGGG147110.1468145797027222No Hit
GGGCTG145950.14565690916737342No Hit
GGGTCG144710.1444193992847592No Hit
GTGCGG144700.14440941936635102No Hit
GGCTGG144520.14422978083500382No Hit
GTGAGG144250.14396032303798295No Hit
GAGTGG142250.14196433935634717No Hit
GAAGGG141170.1408865081682638No Hit
GGGGCT140470.1401879138796913No Hit
GCTGGG139940.1396589782040578No Hit
GTGGGA139880.13959909869360873No Hit
TGGGGT139560.13927974130454698No Hit
GCGGTG139360.1390801429363834No Hit
GGTAGG139320.1390402232627507No Hit
GGTGGC139160.13888054456821983No Hit
GTGGAG138240.13796239207466734No Hit
GGGTGA137200.13692448056021675No Hit
TCGGGG137190.13691450064180855No Hit
GGGTGC136740.1364654043134405No Hit
TGGGAG136370.13609614733233788No Hit
GGAGGT136220.13594644855621518No Hit
GCCGGG136020.1357468501880516No Hit
GGCGGT135830.1355572317382962No Hit
GGGGTC135520.13524785426764263No Hit
GTGGGC135510.13523787434923448No Hit
CGGTGG132930.1326630553999243No Hit
GATGGG132790.13252333654220977No Hit
GTGGCG132750.13248341686857704No Hit
TGGGGC132570.1323037783372298No Hit
ACGGGG132140.13187464184567813No Hit
GGGCAG131530.13126586682277921No Hit
GGGAAG131350.131086228291432No Hit
CGGGTG130690.13042755367649217No Hit
AGGGGC130570.130307794655594No Hit
GCAGGG129750.12948944134612334No Hit
GGCAGG129580.12931978273318429No Hit
GACGGG129320.12906030485457162No Hit
GGAGTG129180.12892058599685713No Hit
GGACGG128690.12843156999485636No Hit
TGGGGA128620.1283617105659991No Hit
GGTGAG128480.12822199170828458No Hit
GGCGTG128040.12778287529832472No Hit
CGTGGG126240.12598648998485248No Hit
TGGGCG125920.12566713259579076No Hit
GGGGCC125740.1254874940644435No Hit
GGTCGG124850.12459928132611559No Hit
AGGCGG124730.12447952230521743No Hit
GGTGCG124710.12445956246840109No Hit
GGGGCA124440.12419010467138024No Hit
GGGAGT124400.12415018499774752No Hit
AGGAGG124250.12400048622162485No Hit
GGGCCG123580.12333183168827684No Hit
GGCCGG123570.12332185176986868No Hit
GGGGAA123420.12317215299374598No Hit
CTGGGG123420.12317215299374598No Hit
GGAAGG122770.12252345829721434No Hit
CGGGGT122560.12231388001064258No Hit
TGCGGG122270.1220244623768054No Hit
AGCGGG121860.12161528572207006No Hit
GGGAGA121260.12101649061757931No Hit
CCGGGG121230.12098655086235477No Hit
GCGGGA119650.11940972375386247No Hit
GGGCGC119430.11919016554888254No Hit
GGGCGA118380.11814227411602375No Hit
GAGGGC118370.11813229419761556No Hit
TGGCGG118360.11812231427920739No Hit
GGCGGC118050.11781293680855384No Hit
GGGGAC117690.11745365974585938No Hit
CAGGGG117380.11714428227520583No Hit
GAGGGA117340.11710436260157311No Hit
AGGGCG116770.11653550725230691No Hit
AGGGAG116220.11598661173985705No Hit
GCGGGC115960.11572713386124439No Hit
GAGAGG114820.114589423162712No Hit
AGAGGG113970.11374113009801677No Hit
GAGCGG113900.11367127066915952No Hit
AGGGGA113220.11299263621740334No Hit
GGCGCG112630.11240382103132078No Hit
GAGGCG111110.11088687343327756No Hit
CGGGGC109380.10916034754866258No Hit
GGAGAG108970.10875117089392723No Hit
GCGGAG108510.10829209464715102No Hit
GGCGGA108470.10825217497351829No Hit
GGGACG108350.10813241595262013No Hit
GCGCGG107910.10769329954266026No Hit
TGGAGG107820.10760348027698664No Hit
GGGAGC106780.10656556876253603No Hit
GGCGAG106530.10631607080233153No Hit
GAGGAG106350.10613643227098432No Hit
CGAGGG103030.10282309935946887No Hit
CGGGGA102800.10259356123608077No Hit
GCGGCG102790.10258358131767258No Hit
GCGAGG102670.10246382229677443No Hit
GGAGGC102120.10191492678432458No Hit
GGAGGA101560.10135605135346655No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)