FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8938206
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG233590.26133879662205145No Hit
GGGTGG172350.19282392909718124No Hit
GTGGGG153860.17213745129615493No Hit
GGGGGT153810.17208151165905103No Hit
GGGGTG152440.17054876560240387No Hit
TGGGGG136430.15263689380173157No Hit
GGTGGG131070.14664016470419233No Hit
GTGTGG125290.14017354265498022No Hit
GGGTGT118660.1327559467750016No Hit
GGGTTG117410.13135745584740383No Hit
GGGGTT112410.1257634921370127No Hit
GGGAGG112330.12567398871764646No Hit
GGTTGG111980.1252824112579191No Hit
GGGGGA110280.12338046359638613No Hit
GGGTTT109460.12246305354788196No Hit
TGGTGG106010.11860321858771213No Hit
GGGGAG104960.11742848620852998No Hit
AGGGGG103510.11580623673251658No Hit
GGCGGG102950.11517971279695277No Hit
GAGGGG102400.11456437678880975No Hit
GGGCGG101890.11399379249034985No Hit
GTGGGT101790.11388191321614204No Hit
TTGGGG101630.11370290637740951No Hit
GGGGGC101080.1130875703692665No Hit
GTGTTG99360.11116324685289196No Hit
GGAGGG98600.1103129643689125No Hit
GGTGGT97920.10955218530429932No Hit
GTGGTG97210.10875784245742379No Hit
TGGTTG95050.10634125013453481No Hit
CGGGGG94900.10617343122322309No Hit
TGGGTG94650.10589373303770354No Hit
TGGGGT92990.1040365370858537No Hit
GGTGTG92670.10367852340838865No Hit
TTGTGG92390.10336526144060676No Hit
TGTGGG91380.10223528077110774No Hit
GTTGGG90710.10148568963391534No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)