FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11543815
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG711840.6166418987137268No Hit
GGGTGG371160.32152282412703254No Hit
GTGGGG345380.29919051890557846No Hit
TGGGGG323160.27994211618949194No Hit
GGGGGT320540.2776725025479012No Hit
GGGCGG292210.25313122221726525No Hit
GGGGTG291810.25278471631778576No Hit
AGGGGG287050.24866129611397966No Hit
CGGGGG284900.24679882690427732No Hit
GCGGGG284190.24618377893270119No Hit
GGTGGG278520.2412720578075792No Hit
GGCGGG270690.23448920482526792No Hit
GGGGCG268800.23285196445022727No Hit
GGAGGG263750.2284773274692985No Hit
GGGGGC262130.2270739785764065No Hit
GAGGGG252060.21835069255700998No Hit
GGGAGG248380.21516283828179852No Hit
GGGGAG233210.2020216020440383No Hit
GGGGGA230810.19994256664716126No Hit
GTGTGG208310.18045160980143912No Hit
TGGGGT182850.15839650929956864No Hit
GGGTGT181160.15693252187426773No Hit
TGGTGG180660.15649938949991835No Hit
GTGGGT179530.15552051033388875No Hit
GGGGTT178120.1542990770382235No Hit
TTGGGG176720.15308630639004522No Hit
ATGGGG175110.15169162014464022No Hit
GTTGGG166430.14417244212593497No Hit
CTGGGG163700.14180753936198734No Hit
TGTGGG162490.14075935901606185No Hit
GTGGTG161640.1400230339796679No Hit
CGGTGG161220.13965920278521443No Hit
GTCGGG160630.13914810658348215No Hit
GGGTTG160010.1386110224392889No Hit
GGTTGG159320.13801329976268678No Hit
GTAGGG157020.13602089084067961No Hit
GGGTAG154680.13399383132872453No Hit
GGGTGC154340.13369930131416694No Hit
AGGTGG149580.12957588111036084No Hit
GGCGGT147720.12796462867778113No Hit
GGCTGG146670.12705505069164744No Hit
GTGGCG146020.12649197860499323No Hit
GGATGG143820.12458619615785596No Hit
GGGGCT142820.1237199314091572No Hit
AGGGGT142210.12319150991245095No Hit
GTGCGG142180.12316552196998999No Hit
GGTGGT140960.12210867897657751No Hit
TGGGCG140670.12185746219945486No Hit
GGGCGT140510.12171885983966306No Hit
CGGGGT140500.12171019719217607No Hit
GGCCGG140130.12138967923515753No Hit
GCGTGG138810.12024620976687517No Hit
TGGGTG138340.11983906533498674No Hit
GGGTCG137410.1190334391186969No Hit
GGTGTG136640.11836641526219885No Hit
TGGCGG134760.11673783753464517No Hit
GGGGTA133850.1159495366133293No Hit
GGGTGA132920.11514391039703946No Hit
CCGGGG131850.11421700711593179No Hit
GTGGGC130900.11339405560466796No Hit
TCGGGG130230.11281365822303979No Hit
GCGGGT130200.11278767028057883No Hit
TGCGGG129850.11248447761853426No Hit
GTGAGG129220.11193873082685404No Hit
TAGGGG128390.11121973108543406No Hit
GTGGAG127840.11074328547364976No Hit
TGGGGC127590.11052671928647505No Hit
GGAGGT127280.11025817721437843No Hit
AAGGGG127250.11023218927191747No Hit
GAGTGG126940.10996364719982085No Hit
GGCGCG126880.10991167131489893No Hit
GGGCTG125470.10869023801923369No Hit
CGTGGG124610.10794525033535274No Hit
TGGAGG124170.10756409384592529No Hit
GGGGAT123000.10655056408994774No Hit
GAGGGT122610.1062127208379552No Hit
GCCGGG122300.10594417876585861No Hit
GTGGGA121840.10554569698145717No Hit
CGGCGG121600.10533779344176945No Hit
GGGGCA121440.10519919108197767No Hit
GGGAAG121370.10513855254956875No Hit
AGTGGG121270.10505192607469889No Hit
GGTCGG120420.10431560103830492No Hit
AGGGGC119810.10378717954159869No Hit
GTGTGT119230.10328474598735339No Hit
CGGGGC117410.10170814414472167No Hit
CAGGGG117180.10150890325252093No Hit
TTGTGG117080.10142227677765107No Hit
GGGGCC116770.10115373470555446No Hit
GCAGGG116200.10065996379879615No Hit
TGAGGG115510.100062241122194No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)