FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9779883
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG553540.5659985911896901No Hit
GGGGGT278150.2844103554204074No Hit
TGGGGG272030.2781526118461744No Hit
GTGGGG267150.27316277710070763No Hit
CGGGGG252060.25773314466031955No Hit
GGGTGG244010.24950196234453928No Hit
GGGGTG236820.24215013615193556No Hit
AGGGGG228380.23352017605936595No Hit
GGTGGG220460.22542191966918212No Hit
GGAGGG212480.21726231285179995No Hit
GGCGGG212270.2170475863566057No Hit
GAGGGG211840.21660790829501744No Hit
GGGGCG200290.20479795105933274No Hit
GGGGGA198580.2030494638841794No Hit
GCGGGG198490.20295743824338186No Hit
GGGAGG197210.2016486291298168No Hit
GGGCGG196730.20115782571222987No Hit
GGGGAG194250.19862200805469757No Hit
GGGGGC190290.19457287985960567No Hit
TTGGGG162280.16593245542917026No Hit
TGGGGT147870.15119812783036363No Hit
GTGGGT142130.14532893696172028No Hit
GGGTGT141410.14459273183533994No Hit
TGTGGG139340.14247614209699644No Hit
GGGTTG137210.1402982019314546No Hit
GGTGTG134860.13789531019951876No Hit
GGGGTT133100.1360956976683668No Hit
GTTGGG130230.13316110223404512No Hit
TGGGTG128660.13155576605568797No Hit
TGGTGG125600.1284268942685715No Hit
CTGGGG125490.1283144184853745No Hit
TCGGGG125450.12827351820057561No Hit
GTGTGG125020.12783384013898735No Hit
GGGGCT124600.1274043871485988No Hit
GGTTGG123780.1265659313102212No Hit
AGGGGT121530.12426529029028262No Hit
AAGGGG120930.12365178601829899No Hit
GTCGGG120900.12362111080469981No Hit
CAGGGG120570.12328368345510882No Hit
GGGAGT119870.12256792847112792No Hit
CGGGTG118980.12165789713435221No Hit
TAGGGG118750.12142272049675851No Hit
CGGGGT117480.12012413645439317No Hit
GTGGTG117460.12010368631199372No Hit
GGGGTA116370.11898915355122346No Hit
ATGGGG116190.11880510226962837No Hit
TGGGCG116140.11875397691362974No Hit
TGGAGG115820.11842677463523847No Hit
TGGCGG115090.1176803444376584No Hit
TGAGGG114700.11728156666086906No Hit
TGGGGC114200.1167703131008827No Hit
GGGTAG113960.11652491139208926No Hit
TGCGGG113470.11602388290330264No Hit
GTGAGG113140.11568645555371164No Hit
GGGTCG110550.11303816211298233No Hit
GGTGGT110370.11285411083138724No Hit
GGTAGG110330.11281321054658834No Hit
GTAGGG110220.11270073476339133No Hit
GGTCGG110010.11248600826819707No Hit
CGGTGG109570.11203610513540907No Hit
GATGGG109030.11148395129062381No Hit
GGGATG107960.11038986867225303No Hit
GGGGAT106640.10904015927388908No Hit
AGGTGG105920.10830395414750872No Hit
GTGGGA105690.10806877750991499No Hit
TGGGGA105070.10743482309553193No Hit
GGATGG104750.10710762081714066No Hit
GAGTGG103910.10624871483636358No Hit
GGCTGG102320.10462292851560698No Hit
GGGGTC102270.10457180315960836No Hit
GGTGGA101870.10416280031161929No Hit
GGTGAG101630.10391739860282581No Hit
GCTGGG100750.10301759233724984No Hit
GTGGAG100660.10292556669645231No Hit
CGTGGG100600.10286421626925393No Hit
GAGGGT100350.10260858948926077No Hit
GGGAAG99870.10211778607167386No Hit
CGCGGG99570.10181103393568204No Hit
GGAGGT99510.1017496835084837No Hit
GCGGGT99370.10160653251168751No Hit
AGTGGG99190.10142248123009243No Hit
GTGGCG99020.10124865501969706No Hit
GGCGGT98950.10117707952129898No Hit
AGGGGA98290.10050222482211699No Hit
GTGCGG98210.10042042425251918No Hit
GAAGGG97960.10016479747252599No Hit
GAGGTG97880.10008299690292818No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)