FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13763883
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1074050.7803393853318864No Hit
GGGGGT516270.37509037238982634No Hit
GGGTGG453100.32919489362122595No Hit
TGGGGG448810.32607804062269347No Hit
GTGGGG437140.3175993286196926No Hit
GGTGGG422220.30675936434507617No Hit
GGGGTG422050.30663585268779164No Hit
CGGGGG421700.30638156398161764No Hit
GCGGGG410830.2984840833070144No Hit
GGGCGG410640.29834604086652No Hit
GGCGGG403680.29328932830946036No Hit
GGGGCG386580.2808655086649603No Hit
GAGGGG372940.2709555145157802No Hit
AGGGGG367630.26709759157354074No Hit
GGGAGG365760.2657389633434112No Hit
GGGGGC352180.25587256154386084No Hit
GGGGAG311130.2260481290054558No Hit
GGAGGG297610.2162253195555353No Hit
GGGGGA272860.1982434753332326No Hit
GGTGGT255890.18591410577959724No Hit
GGGGTT249040.18093731253019224No Hit
GTTGGG227480.16527312822987525No Hit
GGGTGT226020.16421238105554953No Hit
CGGGGT225330.16371106903480653No Hit
GGGTTG222740.1618293326091191No Hit
CCGGGG220910.16049976594540946No Hit
TGGGGT219800.15969330747725768No Hit
GTGGGT211640.15376474792760153No Hit
GTCGGG207890.1510402260757375No Hit
TTGGGG206180.1497978441112875No Hit
GCTGGG205600.1493764513981992No Hit
GGGGCT205150.1490495087759755No Hit
TGGTGG203860.14811227325893428No Hit
GGGAGT200220.14546767071472488No Hit
GGTTGG197130.14322266470878894No Hit
GTGGTG197020.14314274540113425No Hit
CGGTGG195910.1423362869329825No Hit
GGCTGG195800.1422563676253278No Hit
GCCGGG191560.13917584158482021No Hit
GCGTGG191240.13894334905346115No Hit
GTGTGG191140.13887069513741143No Hit
GTAGGG190320.13827493302580382No Hit
GGGTAG190080.13810056362728454No Hit
GAGGTG189840.13792619422876523No Hit
CGTGGG188940.13727230898431786No Hit
GGGGCC187350.13611711171912752No Hit
TGGCGG186940.13581923066332371No Hit
GGTGTG186120.13522346855171613No Hit
TGGGCG186020.1351508146356664No Hit
GGGCGT185550.13480934123023278No Hit
GGCCGG185010.13441701008356435No Hit
GGGCCG184990.13440247930035443No Hit
TGTGGG183990.13367594013985734No Hit
GGCGGT182590.13265878531516143No Hit
CGGGCG182400.13252074287466697No Hit
GCGGGT182070.13228098495170296No Hit
TGGGTG179760.1306026794909547No Hit
GGCAGG179480.1303992485260155No Hit
GTGGAG179350.13030479843515091No Hit
TAGGGG178230.12949107457539416No Hit
GCAGGG177730.12912780499514562No Hit
TCGGGG176920.12853930827514298No Hit
GAGGGT176430.12818330408649944No Hit
GGGTCG175260.12733325326871786No Hit
ATGGGG174810.12700631064649415No Hit
GGGGTC173890.12633789461883685No Hit
GGTCGG173360.1259528288637734No Hit
GAGTGG173200.12583658259809385No Hit
GTGGCG172790.12553870154229005No Hit
TGGGGC172530.12534980136056081No Hit
GCGCGG172430.12527714744451113No Hit
GGTGGC169340.12303214143857516No Hit
GGTAGG168670.12254536020104209No Hit
CGGGTG168610.12250176785141229No Hit
GGGGAT166990.121324774411407No Hit
GTGCGG166370.12087432013189883No Hit
CGGGGC165710.12039480428597076No Hit
TGCGGG165320.12011145401337689No Hit
GGGTGC163870.11905797223065613No Hit
CTGGGG162740.11823698297929444No Hit
GGATGG162700.11820792141287455No Hit
GCGGTG161340.11721982815459853No Hit
GGTGCG160610.11668945456743565No Hit
GGGCTG159910.11618087715508771No Hit
GGAGGT159840.11613001941385291No Hit
GAGGCG159640.1159847115817535No Hit
AGGGGT159470.115861199924469No Hit
AGGGTG159370.11578854600841927No Hit
CGGCGG158860.11541801103656577No Hit
AGGTGG158380.11506927223952716No Hit
GGAGTG157630.11452436786915438No Hit
AAGGGG156450.1136670516597678No Hit
TGAGGG156340.11358713235211314No Hit
GTGAGG154980.11259903909383712No Hit
CAGGGG152830.11103697989876839No Hit
CGCGGG152160.11055019866123535No Hit
GGTGAG149790.10882830085085728No Hit
GGCGTG148380.1078038806345564No Hit
TGGGAG148030.10754959192838243No Hit
GGCGGC146590.10650337553726663No Hit
GATGGG143940.10457804676194937No Hit
GGGATG141300.10265998337823709No Hit
ACGGGG140820.10231124458119849No Hit
GTGGGC140670.10220226370712393No Hit
AGGGGC139890.10163556316193621No Hit
GAGGAG138200.10040771198069613No Hit
AGGCGG138190.10040044658909117No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)