FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12042457
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG732560.6083143996279164No Hit
TGGGGG312260.2592992443319499No Hit
GGGTGG308600.2562599974407216No Hit
GGGGGT306550.25455768702350356No Hit
CGGGGG305950.25405944982822026No Hit
AGGGGG297190.24678518677708378No Hit
GTGGGG280870.23323313506537743No Hit
GGTGGG277340.23030183956646055No Hit
GGGGTG277140.2301357605013661No Hit
GCGGGG275810.2290313347184881No Hit
GGGGGA263760.21902507104654806No Hit
GGCGGG263610.21890051174772723No Hit
GGGCGG262220.21774626224532084No Hit
GAGGGG260770.21654218902338618No Hit
GGAGGG255200.21191688706050602No Hit
GGGGAG253340.2103723517551277No Hit
GGGGCG252210.2094340050373441No Hit
GGGGGC252050.20930114178526857No Hit
GGGAGG251900.20917658248644772No Hit
GCAATT220390.18301082578081865No Hit
GGGTGT159740.13264734929092958No Hit
GGTTGG157210.13054644911748492No Hit
GGGTTG156680.13010633959498463No Hit
GTGTGG155020.12872788335470078No Hit
GGGGTT154910.12863653986889886No Hit
TGGTGG152850.12692592549842613No Hit
GGGTAG150750.1251820953149345No Hit
TGGGTG149770.12436830789597172No Hit
TGGGGT149080.12379533512139591No Hit
TTGGGG147860.12278225282431983No Hit
TGTGGG147370.12237535911483843No Hit
GGTGGT145390.12073117637040348No Hit
GTGGGT145100.12049036172601656No Hit
GGTGTG144080.1196433584940349No Hit
GTTGGG143970.11955201500823297No Hit
GTGGTG142490.1183230299265341No Hit
AGTGGG142410.11825659830049633No Hit
GGGGTA141730.11769192947917523No Hit
CGGGGT141710.11767532157266576No Hit
GTAGGG138740.11520904745601333No Hit
CAGGGG138740.11520904745601333No Hit
TAGGGG137700.11434543631752224No Hit
GGTAGG135880.11283411682516283No Hit
ATGGGG134660.11182103452808675No Hit
AGGTGG134630.11179612266832258No Hit
AGGGGT134310.11153039616417149No Hit
GGGTGA134280.11150548430440732No Hit
CGTGGG133350.11073321665171817No Hit
CGGTGG132770.1102515873629443No Hit
GGGATG132690.11018515573690653No Hit
GGGGAT131700.10936306436468902No Hit
TCGGGG129200.10728707605100853No Hit
TGCGGG129130.10722894837822547No Hit
AGGGGA129050.10716251675218769No Hit
AGGGTG128810.10696322187407437No Hit
TGAGGG128730.1068967902480366No Hit
TGGGGA127410.10580066841841328No Hit
AAGGGG126410.10497027309294107No Hit
ACGGGG125170.10394058288935555No Hit
TGGGAG124630.10349216941360057No Hit
CCGGGG124600.10346725755383641No Hit
TGGAGG124440.10333439430176083No Hit
CGGGTG124320.10323474686270417No Hit
GAAGGG123690.1027115978076567No Hit
GAGGGT123300.10238774363072255No Hit
GAGTGG123260.10235452781770364No Hit
TGGCGG123260.10235452781770364No Hit
GGATGG123090.10221336061237338No Hit
GCGGGT122460.1016902115573259No Hit
GGGGCT122130.10141618109992005No Hit
GATGGG121750.1011006308762406No Hit
CTGGGG121520.10090963995138201No Hit
GGCTGG121070.10053596205491953No Hit
GTGGGA120710.10023701973774952No Hit
GGGAGT120430.10000450904661731No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)