FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14050936
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG723850.515161409887569No Hit
GGGGGT445680.31718883354105376No Hit
GTGGGG384580.27370418597024426No Hit
TGGGGG378930.26968310153857367No Hit
GGGGTG361070.256972204556337No Hit
GGGTGG344210.24497300393368812No Hit
GGTGGG340340.24221873902208366No Hit
GGGCGG314960.22415588541574738No Hit
AGGGGG314180.22360076225526898No Hit
GGGAGG291080.20716057634879273No Hit
CGGGGG290710.20689724869574522No Hit
GGGGGA286450.20386542220390155No Hit
GGGGGC284580.20253455001147253No Hit
GGGGCG280230.19943867084726596No Hit
GCGGGG274040.19503327038141802No Hit
GGGGAG254710.18127617975058744No Hit
GAGGGG251890.17926919601655006No Hit
GGCGGG247940.1764579953961786No Hit
GTGTGG246940.17574629903659086No Hit
GGAGGG239420.17039434241249124No Hit
GGGTGT238280.16958300856256125No Hit
GTGGGT230090.16375421537753784No Hit
TGGGGT224230.1595836747103538No Hit
GGTTGG219850.1564664446553596No Hit
TTGGGG218710.15565511080542963No Hit
GTGGTG218200.1552921456620399No Hit
GGGTTG216600.15415343148669952No Hit
GGGGTT216200.15386875294286445No Hit
TGGTGG210340.14969821227568042No Hit
GGTGGT209940.14941353373184532No Hit
GTTGGG205860.14650981258472745No Hit
GGGCGT193950.13803350894203775No Hit
TGTGGG185080.13172076223249468No Hit
GAGGGT182590.12994863829712128No Hit
GGGTCG178680.1271659055311333No Hit
TGGGTG175800.12511622001552067No Hit
GATGGG172970.12310211931788742No Hit
GGGTAG171590.12211997834165639No Hit
ATGGGG170530.12136558020049341No Hit
GGGGCT169710.12078198918563146No Hit
GGGGTC167630.11930166075768901No Hit
GGTGTG167480.11919490630375087No Hit
GGGATG166490.11849032690775903No Hit
GTCGGG164550.11710963597015886No Hit
GGAGGT163820.11659009762765983No Hit
AGGTGG163400.11629118515663298No Hit
GGGTGA163100.11607767624875667No Hit
ATCTCG163000.1160065066127979No Hit
AGGGGT162010.11530192721680606No Hit
CGTGGG161450.11490337725543692No Hit
GGTAGG159710.1136650255897543No Hit
GTTGGT159180.11328782651917281No Hit
GCGGGT157850.11234127036092115No Hit
CGGGGT157450.11205659181708605No Hit
GGGGAT157410.11202812396270256No Hit
TGGAGG156460.11135201242109423No Hit
GTGTGT156310.11124525796715606No Hit
GTGAGG156110.11110291869523851No Hit
GGTCGG155730.11083247407859519No Hit
GTAGGG155650.11077553836982817No Hit
GTGGTT154340.10984321613876827No Hit
GGGCTG152750.10871161892702379No Hit
TGAGGG152490.108526577873531No Hit
CGGTGG152350.10842694038318872No Hit
GGGGTA152270.10837000467442169No Hit
TCGGGG150850.10735939584380713No Hit
GGTTGT150450.10707471729997203No Hit
AGTGGG149150.10614951203250801No Hit
GGGTGC147450.10493962822120889No Hit
TAGGGG146670.10438450506073046No Hit
CTGGGG145760.10373686137350566No Hit
TGTGGT145620.10363722388316338No Hit
GTTTGG145220.10335254533932828No Hit
GGTGGA145080.10325290784898601No Hit
GTGTTG144850.10308921768628083No Hit
TTGTGG144500.10284012396042513No Hit
GGGTTT143790.10233481954511786No Hit
GTGGCG143500.1021284276008374No Hit
GCGTGG142330.10129574286011978No Hit
GGATGG142060.1011035848430311No Hit
GTGGGA141200.10049152597378566No Hit
GTGCGG140890.10027090010231347No Hit
GAGGTG140780.10019261350275882No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)