FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14260233
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG668290.4686389065311906No Hit
GGGGGT336990.23631451183160893No Hit
CGGGGG321950.22576769958807824No Hit
GTGGGG315430.2211955442803775No Hit
AGGGGG311880.21870610389044834No Hit
TGGGGG300270.21056458193915908No Hit
GGCGGG287080.20131508370164777No Hit
GGTGGG285300.20006685725261292No Hit
GGGTGG281020.1970655037684167No Hit
GGGGCG276580.19395195015397013No Hit
GGAGGG274590.1925564610339817No Hit
GGGGTG265970.18651167901674537No Hit
GCGGGG252100.17678533022567022No Hit
GGGCGG252090.17677831771752958No Hit
GGGGAG246120.1725918503575643No Hit
GAGGGG238780.16744466938233057No Hit
GGGGGA223870.1569890197446283No Hit
GGGGGC216570.15186988880195718No Hit
GGGAGG216540.15184885127753522No Hit
GTGGGT177110.12419853167897046No Hit
AGGGGT174490.12236125454612137No Hit
GGTGGT170560.11960533884684774No Hit
GGGGTT170410.11950015122473806No Hit
TGGGGT170330.11944405115961289No Hit
CTGGGG169430.11881292542695482No Hit
CGGGGT168650.11826594979198446No Hit
TTGGGG166410.11669514796847989No Hit
GTAGGG162940.11426180764367594No Hit
ATGGGG162210.11374989454940884No Hit
TGGGTG159950.11216506770962298No Hit
TGTGGG159420.11179340477816878No Hit
GTGTGG159410.11178639227002812No Hit
GTCGGG159350.11174431722118425No Hit
AGGTGG157090.1101594903813984No Hit
GGGGCT156640.10984392751506936No Hit
GTTGGG154760.10852557598462802No Hit
GGGGAT152010.10659713624595053No Hit
GGTTGG151220.10604314810283956No Hit
TAGGGG151210.1060361355946989No Hit
CGGTGG150940.10584679787490148No Hit
GGGTGT150900.1058187478423389No Hit
GGCGGT149790.10504035943872726No Hit
AAGGGG148380.10405159579089625No Hit
GGGTAG147670.10355370771291043No Hit
TGGTGG147010.10309088217562785No Hit
GTGGCG146040.10241066888598525No Hit
GGATGG146010.1023896313615633No Hit
GGGTCG145970.10236158132900072No Hit
TGAGGG145270.10187070575915555No Hit
TGCGGG145020.10169539305563942No Hit
TCGGGG144740.10149904282770134No Hit
GGAGGT144130.10107127983112199No Hit
CGCGGG142970.10025782888680711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)