FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31882462
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG738780.23171987157077142No Hit
GGGGGT551800.17307320871267723No Hit
GTGGGG517230.16223025687288517No Hit
GGGTGG515830.16179114398379899No Hit
TGGGGG463350.1453306836843403No Hit
GGGGTG458320.14375301380426644No Hit
GGTGGG452600.1419589240002858No Hit
GTGTGG411530.1290772337468794No Hit
CGGGGG408500.12812686799407147No Hit
GGGGCG400860.1257305662279155No Hit
GGCGGG394970.12388315557311728No Hit
GGGTGT378780.11880512866289936No Hit
GGGGTT377250.11832524100554093No Hit
GTTGGG374230.11737801177336932No Hit
GTGGGT370450.11619240697283667No Hit
GGGTTG367130.11515108212157518No Hit
TTGGGG363650.11405957294013241No Hit
GGAGGG352290.11049648549726178No Hit
AGGGGG349230.10953671018254488No Hit
GTGGTG344910.1081817332676504No Hit
GGTTGG340420.10677343550193834No Hit
GGTGGT340200.10670443204793909No Hit
GGGCGG333530.10461237278350713No Hit
GGGGAG327250.10264263782389202No Hit
GGGGGC326840.1025140404778025No Hit
GTTTGG326670.1024607196269849No Hit
TGGGGT321580.10086423062309303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)