FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14580790
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG397970.2729413152510941No Hit
GGTGGG252760.17335137533700162No Hit
GGGTGG245930.16866712983315718No Hit
GGGGGT244560.1677275373968077No Hit
TGGGGG232610.1595318223498178No Hit
CGGGGG229200.15719312876737132No Hit
GTGGGG219120.15027992310430366No Hit
GAGGGG210260.14420343479331368No Hit
GGGGTG208640.1430923838831778No Hit
AGGGGG207210.1421116414131196No Hit
GGGCGG201380.13811322980442076No Hit
GGGGCG200070.13721478740178003No Hit
GCGGGG189850.130205564993392No Hit
GGCGGG186210.127709129615062No Hit
GGGGGC181100.12420451841086799No Hit
GGGGTT171000.11727759606989743No Hit
GGGAGG170360.11683866237700426No Hit
GGGGAG168810.1157756198395286No Hit
GGGGGA167640.11497319418220824No Hit
GGAGGG166740.1143559436765772No Hit
GGTTGG166160.11395816001739274No Hit
GGGTTG163790.11233273368589769No Hit
GGTGGT157470.10799826346857751No Hit
GTTGGG156370.10724384618391733No Hit
CGGGGT153110.10500802768574269No Hit
GTGGTG151390.10382839338609225No Hit
TGGGGT150010.10288194261079134No Hit
GGGTGT149690.10266247576434474No Hit
TGAGGG149400.10246358393475252No Hit
GGTGTG148020.10151713315945157No Hit
TGGTGG146370.10038550723246134No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)