FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15297207
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1049330.6859618229654603No Hit
GTGGGG591820.3868810822786146No Hit
GGGTGG538360.3519335261659204No Hit
GGGGGT528440.34544868223329916No Hit
TGGGGG464860.30388553936676155No Hit
GGGGTG462130.3021008998570785No Hit
AGGGGG458930.3000090147175233No Hit
GGTGGG438670.28676476692771435No Hit
GAGGGG397170.2596356315241076No Hit
CGGGGG392170.2563670609935526No Hit
GGAGGG390420.2552230613078583No Hit
GGGGGA381630.24947691431514266No Hit
GCGGGG371860.2430901274984381No Hit
GGGAGG370450.24216839060882162No Hit
GGGGAG361670.23642878075716697No Hit
GGCGGG361510.23632418650018922No Hit
GGGGGC350050.2288326228441571No Hit
GGGCGG346890.22676688626884633No Hit
GTGTGG341990.22356368714890243No Hit
GGGGCG322470.2108031877976156No Hit
GGGTGT293480.1918520158614576No Hit
GGGTTG291540.19058381049560225No Hit
GTAGGG265000.17323423811941618No Hit
GTGGGT262420.17154765572564978No Hit
TGGTGG259470.16961919911262233No Hit
AGGTGG257710.16846866228586696No Hit
GTTGGG255700.16715469693258383No Hit
GGTGGT254540.16639638856949507No Hit
GTGGTG250610.16382729213247882No Hit
TTGGGG250080.16348082365623998No Hit
GGTTGG247680.16191190980157358No Hit
GGGTAG245110.1602318645488683No Hit
ATGGGG243070.15889828777240186No Hit
GGGGTT236950.1548975574430025No Hit
AAGGGG228950.14966784459411447No Hit
TGGGGT228420.14932137611787563No Hit
AGGGGT226430.14802048504671475No Hit
TGTGGG221350.14469961738767081No Hit
GGGGTA218440.14279730933888782No Hit
GGATGG215560.14091461271328812No Hit
TGAGGG211870.13850240766173852No Hit
GTCGGG211670.1383716648405163No Hit
GTGGAG209690.13707731091041653No Hit
AGGGTG207170.1354299513630168No Hit
TGGGTG204520.13369760898182265No Hit
GGAGGT204230.13350803189105043No Hit
GTGAGG202590.1324359407570284No Hit
GAGTGG202200.13218099225564509No Hit
CGGTGG202010.132056786575484No Hit
AGTGGG201040.13142268389255632No Hit
TAGGGG200500.1310696782752564No Hit
GGTGTG200030.1307624326453842No Hit
CTGGGG198850.12999105000017325No Hit
GTGGGA198730.12991260430743992No Hit
GAGGGT197700.1292392787781456No Hit
CGGGGT196710.1285921018130957No Hit
GGCTGG196390.12838291329914014No Hit
GGTAGG195760.12797107341229022No Hit
GATGGG194440.1271081707922237No Hit
GGGTCG192630.1259249482601628No Hit
GGGTGA191570.12523201130768513No Hit
GGCGGT190240.1243625715465575No Hit
GGGAGT189860.1241141601862353No Hit
GTGCGG189110.12362387460665206No Hit
GGGGAT187050.12227722354806339No Hit
GTGTGT186220.12173464083999125No Hit
TGGGGA184660.12071484683445809No Hit
GGGTGC184470.12059064115429699No Hit
GTGGCG184030.12030300694760815No Hit
GCGGGT183320.11983886993226933No Hit
GGGATG182230.11912632155660834No Hit
AGGAGG182220.11911978441554723No Hit
GCGTGG178350.11658991082489764No Hit
GGTGAG175970.11503407125235345No Hit
AGAGGG175960.11502753411129234No Hit
TTGTGG174610.11414502006804247No Hit
GTTGGT173830.11363512306527591No Hit
TGGAGG173300.11328865458903707No Hit
GTGTTG172470.11274607188096494No Hit
GTGGGC172100.11250419766170386No Hit
GTATGG172080.11249112337958164No Hit
ATGTGG171360.11202044922318172No Hit
GGGGAA171310.11198776351787616No Hit
GGTGGA170710.11159553505420956No Hit
GGGCGT170520.1114713293740485No Hit
GGAGTG170250.1112948265653985No Hit
GAAGGG166900.10910488430992665No Hit
GCTGGG166610.10891530721915445No Hit
TGGGAG165610.10826159311304345No Hit
AGGGGA165320.10807201602227126No Hit
GAGGTG164760.1077059361228491No Hit
TGCGGG164410.10747713618571024No Hit
GGGGCT163200.10668614211731592No Hit
GGGCTG162520.10624161652516044No Hit
GGAGGA162440.10618931939667157No Hit
GTTTGG161950.10586899948467716No Hit
GCAGGG160440.10488189118444954No Hit
CGGGTG158960.10391439430740526No Hit
GGAAGG157620.1030384174052165No Hit
GGGAAG157370.10287498887868876No Hit
CAGGGG156840.10252852040244995No Hit
GGCGTG155000.10132568644720567No Hit
GTGGTT154110.1007438808927669No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)