FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11623338
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG340280.2927558331350254No Hit
GGGGGT212740.1830283176829238No Hit
TGGGGG208130.17906215925235933No Hit
GGTGGG197670.1700630232038335No Hit
GGGGTG191700.16492680501934986No Hit
CGGGGG190520.16391160611521405No Hit
GGGTGG189300.16286199368890417No Hit
GTGGGG189230.1628017700250995No Hit
GGGGCG167820.1443819322814152No Hit
AGGGGG164860.1418353316405322No Hit
GGCGGG158510.1363721849953946No Hit
GGAGGG156530.1346687156477769No Hit
GCGGGG155010.1333610018051613No Hit
GGGGGA151120.1300142867737306No Hit
GGGAGG150570.12954110084383677No Hit
GAGGGG150140.12917115548046526No Hit
GGGGAG147610.12699450020295375No Hit
GGGCGG147050.12651271089251642No Hit
GGGGGC141700.12190990230173122No Hit
TTGGGG135720.11676508073670402No Hit
GGTGTG131810.11340115894418626No Hit
GTGGTG131430.11307423048353235No Hit
TGTGGG128880.11088036844493382No Hit
TGGGGT127810.10995980672677676No Hit
GGTTGG126290.10865209288416115No Hit
TGGTGG125770.10820471709589792No Hit
GGTGGT124600.10719812157230564No Hit
GGGGTT122140.10508168995859882No Hit
GTTGGG121420.1044622465594651No Hit
GGGTTG119990.10323196314174121No Hit
GGGTGT117950.10147687351086238No Hit
GTGGGT116920.10059072531487943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)