FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15113691
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1531331.01320716428568No Hit
GGGGGT660560.4370606756483244No Hit
TGGGGG639800.42332478545445984No Hit
GGGTGG623900.41280452273372537No Hit
GTGGGG601570.3980298393026561No Hit
GGGGTG596330.39456278416701784No Hit
GGTGGG591090.3910957290313795No Hit
CGGGGG584990.3870596533963808No Hit
AGGGGG510240.33760118557406No Hit
GGCGGG509340.3370056990049618No Hit
GGGCGG494810.3273918991727434No Hit
GCGGGG489930.32416303866474444No Hit
GGGGCG476170.3150587106749767No Hit
GGAGGG471460.31194233096336293No Hit
GGGGGA462100.3057492706447419No Hit
GGGGGC461810.3055573916391436No Hit
GAGGGG459340.3039231118328408No Hit
GGGAGG439480.2907827082080744No Hit
GGGGAG415830.27513464447566116No Hit
GGGGTT318100.21047141958903354No Hit
GGGTGT296400.19611357675633304No Hit
TTGGGG291620.1929508814226783No Hit
GGTTGG290740.19236862788844894No Hit
GTTGGG285910.18917284996762207No Hit
GGGTTG285530.18892142230511397No Hit
TGGGGT282890.18717466170242597No Hit
TGTGGG271490.1796318318271824No Hit
GTGGGT268540.17767995918402724No Hit
GTGGTG263980.1746628272339298No Hit
GTCGGG262540.17371004872337276No Hit
CGGGGT261380.17294253270097953No Hit
TGGTGG259410.17163907876639795No Hit
GTGTGG256530.1697335217452838No Hit
GGCGGT246580.16315008689803173No Hit
ATGGGG244900.16203851196904845No Hit
CGGTGG241740.15994769245977042No Hit
TGGGTG240310.15900153046664775No Hit
GGCTGG240310.15900153046664775No Hit
CGTGGG239630.15855160728110693No Hit
GGTGGT237370.15705627434092706No Hit
GGATGG236630.15656665205077963No Hit
CTGGGG236060.15618951055701746No Hit
GTAGGG235380.15573958737147664No Hit
AGGGGT235160.1555940239879193No Hit
CGGGTG234790.1553492128428456No Hit
GGTGTG233360.15440305084972294No Hit
TGCGGG232300.15370170000167396No Hit
GGGGTA230930.15279523711315784No Hit
GGTCGG227930.1508102818828306No Hit
GGGTAG225730.1493546480472573No Hit
AGGTGG225290.1490635212801426No Hit
GGGTCG224700.14867314675151158No Hit
CAGGGG224630.14862683112947062No Hit
TCGGGG224090.14826953918801172No Hit
TAGGGG222900.14748217361331523No Hit
GGTAGG220810.1460993214695206No Hit
CCGGGG220110.14563616524911088No Hit
GGGGAT219930.14551706793529123No Hit
GGGGCT219060.14494143091849634No Hit
GCGGGT211170.13972099866273566No Hit
GGCCGG210740.13943648841305542No Hit
GGAGGT210090.13900641477981784No Hit
GAGGGT209990.1389402496054736No Hit
TGAGGG209860.1388542348788261No Hit
GGGCGT209040.1383116804492033No Hit
TGGGGA208620.1380337867169575No Hit
GGCGTG206570.13667740064290054No Hit
CGCGGG206200.13643258949782683No Hit
GGGCCG205640.1360620645214991No Hit
GGGAGT205430.13592311765537615No Hit
GCTGGG205150.1357378551672123No Hit
AGTGGG204020.13499018869712237No Hit
TGGCGG203930.13493064004021255No Hit
GGGTGA203310.13452041595927824No Hit
GCCGGG203250.13448071685467172No Hit
TGGGCG199800.13219801833979533No Hit
GGGATG199620.13207892102597574No Hit
GTGGAG198710.13147681793944313No Hit
GGGGTC198280.1311923076897629No Hit
GTGAGG198090.13106659385850883No Hit
GAGTGG197100.13041155863250084No Hit
GGGCTG195730.12950509574398472No Hit
GATGGG195510.12935953236042738No Hit
GTGGGA195410.12929336718608314No Hit
GTGGGC194430.12864494847750957No Hit
GTGCGG194100.12842660340217354No Hit
GGGTGC193950.1283273556406572No Hit
AGGGTG192020.12705036777581333No Hit
GGAGTG191180.12649458031132169No Hit
GGACGG190450.12601157453860873No Hit
GCGTGG189970.12569398170175639No Hit
GCGGTG188930.12500586388857626No Hit
GGTGGA188900.12498601433627299No Hit
GAGGTG188660.1248272179178468No Hit
AGCGGG188470.12470150408659274No Hit
TGGAGG186420.12334511801253578No Hit
CGAGGG186320.12327895283819154No Hit
GGCAGG185300.12260406805988029No Hit
CGGGGC184900.12233940736250332No Hit
GTGGCG183880.12166452258419204No Hit
GGGCAG183070.12112858467200369No Hit
CGGGGA182120.12050001551573339No Hit
GGGGCA180840.11965310128412708No Hit
ACGGGG179250.11860107501205364No Hit
CGGGCG178100.11784017550709486No Hit
GGCGCG177670.11755566525741461No Hit
AAGGGG175620.11619927918335765No Hit
GACGGG174390.11538544753892349No Hit
GCAGGG173890.11505462166720226No Hit
GGCGGC172050.11383718245926823No Hit
GGAAGG171310.11334756016912083No Hit
CGGCGG171050.1131755307158258No Hit
GGGGAA169950.11244771379803914No Hit
GAAGGG168100.11122365807267066No Hit
AGAGGG168020.11117072593319528No Hit
GGGACG167680.11094576434042486No Hit
GGCGGA166750.11033042821902339No Hit
GGGCGA165240.10933133408642536No Hit
CGGAGG164830.10906005687161396No Hit
GGTGCG163180.10796833149493397No Hit
AGGGGA163120.10792863239032742No Hit
GGAGGA162360.10742577706531117No Hit
AGGAGG160450.10616202223533615No Hit
GGGGCC160380.10611570661329518No Hit
TGGGAG160050.10589736153795919No Hit
TGGGGC159320.10541435576524621No Hit
AGGCGG158250.10470638839976283No Hit
CGGGAG157900.10447481028955799No Hit
GAGGGC154880.10247662202436188No Hit
AGGGGC154150.10199361625164892No Hit
GGAGGC153740.10172233903683753No Hit
GTTTGG153140.10132534799077207No Hit
GGGAGA152700.1010342212236574No Hit
AGGGCG151920.10051813286377233No Hit
GCGGGA151760.10041226858482154No Hit
GGGTTT151540.10026670520126421No Hit
GCGAGG151160.10001527753875608No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)