FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11573951
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG299180.2584942687246559No Hit
GGTGGG192140.16601072529164848No Hit
TGGGGG191620.16556144051413385No Hit
GGGGTG181630.15692998873072816No Hit
GTGGGG178860.15453668328127534No Hit
GGGGGT173190.14963775118799102No Hit
CGGGGG167690.1448857006565865No Hit
GGGTGG164810.14239735419650557No Hit
GGGGGC153880.13295373377682349No Hit
GCGGGG149990.1295927380373392No Hit
GAGGGG149710.12935081546483132No Hit
AGGGGG147260.1272339929553875No Hit
GGTGTG136290.11775581216820427No Hit
TGGTGG132920.11484410120623459No Hit
GGTGGT132060.11410105330496043No Hit
GGCGGG129000.11145718519112444No Hit
GGGGAG125210.10818259037039296No Hit
GGAGGG124940.10794930788976037No Hit
TGGGGT123410.1066273738328424No Hit
GGGAGG122600.10592752639094463No Hit
GGGCGG121800.10523631904092215No Hit
GGGGCG121590.10505487711154125No Hit
GGGGTT121070.10460559233402664No Hit
GGGTGT120480.10409582691338506No Hit
TGTGGG119630.10336141910398619No Hit
TTGGGG119220.10300717533709967No Hit
GGGTTG117230.10128779705391876No Hit
GGGGGA116180.10038058740701424No Hit
TGGGTG115820.10006954409950412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)